Literature DB >> 15630021

Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export.

Ewan F Dunn1, Christopher M Hammell, Christine A Hodge, Charles N Cole.   

Abstract

In eukaryotic cells, pre-mRNAs undergo extensive processing in the nucleus prior to export. Processing is subject to a quality-control mechanism that retains improperly processed transcripts at or near sites of transcription. A poly(A) tail added by the normal 3'-processing machinery is necessary but not sufficient for export. Retention depends on the exosome. In this study, we identify the poly(A)-binding protein, Pab1, and the poly(A) nuclease, PAN, as important factors that couple 3' processing to export. Pab1 contains a nonessential leucine-rich nuclear export signal and shuttles between the nucleus and the cytoplasm. It can exit the nucleus either as cargo of exportin 1 or bound to mRNA. Pab1 is essential but several bypass suppressors have been identified. Deletion of PAB1 from these bypass suppressor strains results in exosome-dependent retention at sites of transcription. Retention is also seen in cells lacking PAN, which Pab1 is thought to recruit and which may be responsible for the final step of mRNA biogenesis, trimming of the poly(A) tail to the length found on newly exported mRNAs. The studies presented here suggest that proper loading of Pab1 onto mRNAs and final trimming of the tail allows release from transcription sites and couples pre-mRNA processing to export.

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Year:  2005        PMID: 15630021      PMCID: PMC540228          DOI: 10.1101/gad.1267005

Source DB:  PubMed          Journal:  Genes Dev        ISSN: 0890-9369            Impact factor:   11.361


  96 in total

Review 1.  Formation of mRNA 3' ends in eukaryotes: mechanism, regulation, and interrelationships with other steps in mRNA synthesis.

Authors:  J Zhao; L Hyman; C Moore
Journal:  Microbiol Mol Biol Rev       Date:  1999-06       Impact factor: 11.056

2.  Inefficient processing impairs release of RNA from the site of transcription.

Authors:  N Custódio; M Carmo-Fonseca; F Geraghty; H S Pereira; F Grosveld; M Antoniou
Journal:  EMBO J       Date:  1999-05-17       Impact factor: 11.598

Review 3.  Importins and exportins: how to get in and out of the nucleus.

Authors:  K Weis
Journal:  Trends Biochem Sci       Date:  1998-05       Impact factor: 13.807

4.  Decapping of stabilized, polyadenylated mRNA in yeast pab1 mutants.

Authors:  J P Morrissey; J A Deardorff; C Hebron; A B Sachs
Journal:  Yeast       Date:  1999-06-15       Impact factor: 3.239

5.  The NES-Crm1p export pathway is not a major mRNA export route in Saccharomyces cerevisiae.

Authors:  M Neville; M Rosbash
Journal:  EMBO J       Date:  1999-07-01       Impact factor: 11.598

6.  Functions of the exosome in rRNA, snoRNA and snRNA synthesis.

Authors:  C Allmang; J Kufel; G Chanfreau; P Mitchell; E Petfalski; D Tollervey
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

7.  Capped mRNA degradation intermediates accumulate in the yeast spb8-2 mutant.

Authors:  R Boeck; B Lapeyre; C E Brown; A B Sachs
Journal:  Mol Cell Biol       Date:  1998-09       Impact factor: 4.272

8.  mRNA stabilization by poly(A) binding protein is independent of poly(A) and requires translation.

Authors:  J M Coller; N K Gray; M P Wickens
Journal:  Genes Dev       Date:  1998-10-15       Impact factor: 11.361

9.  Poly(A) tail length control in Saccharomyces cerevisiae occurs by message-specific deadenylation.

Authors:  C E Brown; A B Sachs
Journal:  Mol Cell Biol       Date:  1998-11       Impact factor: 4.272

10.  Pbp1p, a factor interacting with Saccharomyces cerevisiae poly(A)-binding protein, regulates polyadenylation.

Authors:  D A Mangus; N Amrani; A Jacobson
Journal:  Mol Cell Biol       Date:  1998-12       Impact factor: 4.272

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  55 in total

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2.  Nucleocytoplasmic shuttling of the Rpb4p and Rpb7p subunits of Saccharomyces cerevisiae RNA polymerase II by two pathways.

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Journal:  Eukaryot Cell       Date:  2006-10-20

3.  Following temperature stress, export of heat shock mRNA occurs efficiently in cells with mutations in genes normally important for mRNA export.

Authors:  Christiane Rollenhagen; Christine A Hodge; Charles N Cole
Journal:  Eukaryot Cell       Date:  2007-01-26

4.  Recognition of polyadenosine RNA by zinc finger proteins.

Authors:  Seth M Kelly; Suzette A Pabit; Chad M Kitchen; Peng Guo; Kavita A Marfatia; T J Murphy; Anita H Corbett; Keith M Berland
Journal:  Proc Natl Acad Sci U S A       Date:  2007-07-13       Impact factor: 11.205

5.  A genetic screen for high copy number suppressors of the synthetic lethality between elg1Δ and srs2Δ in yeast.

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Journal:  G3 (Bethesda)       Date:  2013-05-20       Impact factor: 3.154

Review 6.  Transcription termination and the control of the transcriptome: why, where and how to stop.

Authors:  Odil Porrua; Domenico Libri
Journal:  Nat Rev Mol Cell Biol       Date:  2015-02-04       Impact factor: 94.444

7.  Targeting the nuclear RNA exosome: Poly(A) binding proteins enter the stage.

Authors:  Nicola Meola; Torben Heick Jensen
Journal:  RNA Biol       Date:  2017-04-19       Impact factor: 4.652

8.  Functional characterization of three leishmania poly(a) binding protein homologues with distinct binding properties to RNA and protein partners.

Authors:  Tamara D da Costa Lima; Danielle M N Moura; Christian R S Reis; J Ronnie C Vasconcelos; Louise Ellis; Mark Carrington; Regina C B Q Figueiredo; Osvaldo P de Melo Neto
Journal:  Eukaryot Cell       Date:  2010-07-30

9.  Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae.

Authors:  Kim M Keeling; Joe Salas-Marco; Lev Z Osherovich; David M Bedwell
Journal:  Mol Cell Biol       Date:  2006-07       Impact factor: 4.272

10.  Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail.

Authors:  Stacie Meaux; Ambro van Hoof; Kristian E Baker
Journal:  Mol Cell       Date:  2008-01-18       Impact factor: 17.970

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