Literature DB >> 28421898

Targeting the nuclear RNA exosome: Poly(A) binding proteins enter the stage.

Nicola Meola1, Torben Heick Jensen1.   

Abstract

Centrally positioned in nuclear RNA metabolism, the exosome deals with virtually all transcript types. This 3'-5' exo- and endo-nucleolytic degradation machine is guided to its RNA targets by adaptor proteins that enable substrate recognition. Recently, the discovery of the 'Poly(A) tail exosome targeting (PAXT)' connection as an exosome adaptor to human nuclear polyadenylated transcripts has relighted the interest of poly(A) binding proteins (PABPs) in both RNA productive and destructive processes.

Entities:  

Keywords:  Nuclear RNA degradation; RNA exosome; RNA exosome adaptors; poly(A) binding proteins; poly(A) tail; the PAXT connection

Mesh:

Substances:

Year:  2017        PMID: 28421898      PMCID: PMC5546719          DOI: 10.1080/15476286.2017.1312227

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  80 in total

Review 1.  mRNA polyadenylation and its coupling to other RNA processing reactions and to transcription.

Authors:  L Minvielle-Sebastia; W Keller
Journal:  Curr Opin Cell Biol       Date:  1999-06       Impact factor: 8.382

2.  Transcription termination and nuclear degradation of cryptic unstable transcripts: a role for the nrd1-nab3 pathway in genome surveillance.

Authors:  Marilyne Thiebaut; Elena Kisseleva-Romanova; Mathieu Rougemaille; Jocelyne Boulay; Domenico Libri
Journal:  Mol Cell       Date:  2006-09-15       Impact factor: 17.970

3.  Characterization of the essential activities of Saccharomyces cerevisiae Mtr4p, a 3'->5' helicase partner of the nuclear exosome.

Authors:  Jade Bernstein; Dimeka N Patterson; Gerald M Wilson; Eric A Toth
Journal:  J Biol Chem       Date:  2007-12-20       Impact factor: 5.157

4.  Dob1p (Mtr4p) is a putative ATP-dependent RNA helicase required for the 3' end formation of 5.8S rRNA in Saccharomyces cerevisiae.

Authors:  J de la Cruz; D Kressler; D Tollervey; P Linder
Journal:  EMBO J       Date:  1998-02-16       Impact factor: 11.598

5.  Air proteins control differential TRAMP substrate specificity for nuclear RNA surveillance.

Authors:  Karyn Schmidt; Zhenjiang Xu; David H Mathews; J Scott Butler
Journal:  RNA       Date:  2012-08-24       Impact factor: 4.942

6.  Human Telomerase RNA Processing and Quality Control.

Authors:  Chi-Kang Tseng; Hui-Fang Wang; Allison M Burns; Morgan R Schroeder; Martina Gaspari; Peter Baumann
Journal:  Cell Rep       Date:  2015-11-25       Impact factor: 9.423

7.  Yeast poly(A)-binding protein, Pab1, and PAN, a poly(A) nuclease complex recruited by Pab1, connect mRNA biogenesis to export.

Authors:  Ewan F Dunn; Christopher M Hammell; Christine A Hodge; Charles N Cole
Journal:  Genes Dev       Date:  2005-01-01       Impact factor: 11.361

8.  Schizosaccharomyces pombe spPABP, a homologue of Saccharomyces cerevisiae Pab1p, is a non-essential, shuttling protein that facilitates mRNA export.

Authors:  Anjan G Thakurta; Jin Ho Yoon; Ravi Dhar
Journal:  Yeast       Date:  2002-06-30       Impact factor: 3.239

9.  AAA-ATPase NVL2 acts on MTR4-exosome complex to dissociate the nucleolar protein WDR74.

Authors:  Nobuhiro Hiraishi; Yo-ichi Ishida; Masami Nagahama
Journal:  Biochem Biophys Res Commun       Date:  2015-10-08       Impact factor: 3.575

10.  Molecular basis for coordinating transcription termination with noncoding RNA degradation.

Authors:  Agnieszka Tudek; Odil Porrua; Tomasz Kabzinski; Michael Lidschreiber; Karel Kubicek; Andrea Fortova; François Lacroute; Stepanka Vanacova; Patrick Cramer; Richard Stefl; Domenico Libri
Journal:  Mol Cell       Date:  2014-07-24       Impact factor: 17.970

View more
  15 in total

Review 1.  The multitasking polyA tail: nuclear RNA maturation, degradation and export.

Authors:  Agnieszka Tudek; Marta Lloret-Llinares; Torben Heick Jensen
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2018-11-05       Impact factor: 6.237

2.  The RNA exosome shapes the expression of key protein-coding genes.

Authors:  Mengjun Wu; Evdoxia Karadoulama; Marta Lloret-Llinares; Jerome Olivier Rouviere; Christian Skov Vaagensø; Martin Moravec; Bingnan Li; Jingwen Wang; Guifen Wu; Maria Gockert; Vicent Pelechano; Torben Heick Jensen; Albin Sandelin
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

3.  The RNA exosome contributes to gene expression regulation during stem cell differentiation.

Authors:  Marta Lloret-Llinares; Evdoxia Karadoulama; Yun Chen; Luke A Wojenski; Geno J Villafano; Jette Bornholdt; Robin Andersson; Leighton Core; Albin Sandelin; Torben Heick Jensen
Journal:  Nucleic Acids Res       Date:  2018-11-30       Impact factor: 16.971

4.  Regulation of human telomerase RNA biogenesis and localization.

Authors:  Jian Qin; Chantal Autexier
Journal:  RNA Biol       Date:  2020-09-02       Impact factor: 4.652

Review 5.  Controlling nuclear RNA levels.

Authors:  Manfred Schmid; Torben Heick Jensen
Journal:  Nat Rev Genet       Date:  2018-08       Impact factor: 53.242

6.  hnRNPH1-MTR4 complex-mediated regulation of NEAT1v2 stability is critical for IL8 expression.

Authors:  Tanzina Tanu; Kenzui Taniue; Katsutoshi Imamura; Rena Onoguchi-Mizutani; Han Han; Torben Heick Jensen; Nobuyoshi Akimitsu
Journal:  RNA Biol       Date:  2021-09-01       Impact factor: 4.766

7.  Structural analysis of human ARS2 as a platform for co-transcriptional RNA sorting.

Authors:  Wiebke Manuela Schulze; Frank Stein; Mandy Rettel; Max Nanao; Stephen Cusack
Journal:  Nat Commun       Date:  2018-04-27       Impact factor: 14.919

8.  Selective nuclear export of mRNAs is promoted by DRBD18 in Trypanosoma brucei.

Authors:  Amartya Mishra; Jan Naseer Kaur; Daniel I McSkimming; Eva Hegedűsová; Ashutosh P Dubey; Martin Ciganda; Zdeněk Paris; Laurie K Read
Journal:  Mol Microbiol       Date:  2021-07-04       Impact factor: 3.979

9.  The RNA Exosome Adaptor ZFC3H1 Functionally Competes with Nuclear Export Activity to Retain Target Transcripts.

Authors:  Toomas Silla; Evdoxia Karadoulama; Dawid Mąkosa; Michal Lubas; Torben Heick Jensen
Journal:  Cell Rep       Date:  2018-05-15       Impact factor: 9.995

10.  Structural basis for mutually exclusive co-transcriptional nuclear cap-binding complexes with either NELF-E or ARS2.

Authors:  Wiebke Manuela Schulze; Stephen Cusack
Journal:  Nat Commun       Date:  2017-11-03       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.