Literature DB >> 18206975

Nonsense-mediated mRNA decay in yeast does not require PAB1 or a poly(A) tail.

Stacie Meaux1, Ambro van Hoof, Kristian E Baker.   

Abstract

Eukaryotic mRNAs harboring premature translation termination codons are recognized and rapidly degraded by the nonsense-mediated mRNA decay (NMD) pathway. The mechanism for discriminating between mRNAs that terminate translation prematurely and those subject to termination at natural stop codons remains unclear. Studies in multiple organisms indicate that proximity of the termination codon to the 3' poly(A) tail and the poly(A) RNA-binding protein, PAB1, constitute the critical determinant in NMD substrate recognition. We demonstrate that mRNA in yeast lacking a poly(A) tail can be destabilized by introduction of a premature termination codon and, importantly, that this mRNA is a substrate of the NMD machinery. We further show that, in cells lacking Pab1p, mRNA substrate recognition and destabilization by NMD are intact. These results establish that neither the poly(A) tail nor PAB1 is required in yeast for discrimination of nonsense-codon-containing mRNA from normal by NMD.

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Year:  2008        PMID: 18206975      PMCID: PMC2241659          DOI: 10.1016/j.molcel.2007.10.031

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  43 in total

1.  Boundary-independent polar nonsense-mediated decay.

Authors:  Jun Wang; Jayanthi P Gudikote; O Renee Olivas; Miles F Wilkinson
Journal:  EMBO Rep       Date:  2002-02-15       Impact factor: 8.807

Review 2.  Looking at mRNA decay pathways through the window of molecular evolution.

Authors:  Michael R Culbertson; Peter F Leeds
Journal:  Curr Opin Genet Dev       Date:  2003-04       Impact factor: 5.578

3.  Genome-wide analysis of mRNAs regulated by the nonsense-mediated and 5' to 3' mRNA decay pathways in yeast.

Authors:  Feng He; Xiangrui Li; Phyllis Spatrick; Ryan Casillo; Shuyun Dong; Allan Jacobson
Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

4.  Computational modeling and experimental analysis of nonsense-mediated decay in yeast.

Authors:  Dan Cao; Roy Parker
Journal:  Cell       Date:  2003-05-16       Impact factor: 41.582

5.  A genomic screen in yeast reveals novel aspects of nonstop mRNA metabolism.

Authors:  Marenda A Wilson; Stacie Meaux; Ambro van Hoof
Journal:  Genetics       Date:  2007-07-29       Impact factor: 4.562

6.  Rent1, a trans-effector of nonsense-mediated mRNA decay, is essential for mammalian embryonic viability.

Authors:  S M Medghalchi; P A Frischmeyer; J T Mendell; A G Kelly; A M Lawler; H C Dietz
Journal:  Hum Mol Genet       Date:  2001-01-15       Impact factor: 6.150

7.  An internal open reading frame triggers nonsense-mediated decay of the yeast SPT10 mRNA.

Authors:  E M Welch; A Jacobson
Journal:  EMBO J       Date:  1999-11-01       Impact factor: 11.598

8.  The yeast hnRNP-like protein Hrp1/Nab4 marks a transcript for nonsense-mediated mRNA decay.

Authors:  C I González; M J Ruiz-Echevarría; S Vasudevan; M F Henry; S W Peltz
Journal:  Mol Cell       Date:  2000-03       Impact factor: 17.970

9.  Nonsense-mediated mRNA decay in Drosophila: at the intersection of the yeast and mammalian pathways.

Authors:  David Gatfield; Leonie Unterholzner; Francesca D Ciccarelli; Peer Bork; Elisa Izaurralde
Journal:  EMBO J       Date:  2003-08-01       Impact factor: 11.598

Review 10.  Poly(A)-binding proteins: multifunctional scaffolds for the post-transcriptional control of gene expression.

Authors:  David A Mangus; Matthew C Evans; Allan Jacobson
Journal:  Genome Biol       Date:  2003-07-01       Impact factor: 13.583

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  33 in total

1.  Translation drives mRNA quality control.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

Review 2.  Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.

Authors:  Aparna Kishor; Sarah E Fritz; J Robert Hogg
Journal:  Wiley Interdiscip Rev RNA       Date:  2019-05-26       Impact factor: 9.957

Review 3.  Messenger RNA regulation: to translate or to degrade.

Authors:  Ann-Bin Shyu; Miles F Wilkinson; Ambro van Hoof
Journal:  EMBO J       Date:  2008-02-06       Impact factor: 11.598

4.  Nonsense-mediated mRNA decay (NMD) mechanisms.

Authors:  Saverio Brogna; Jikai Wen
Journal:  Nat Struct Mol Biol       Date:  2009-02       Impact factor: 15.369

5.  Inter-kingdom conservation of mechanism of nonsense-mediated mRNA decay.

Authors:  Zoltán Kerényi; Zsuzsanna Mérai; László Hiripi; Anna Benkovics; Péter Gyula; Christophe Lacomme; Endre Barta; Ferenc Nagy; Dániel Silhavy
Journal:  EMBO J       Date:  2008-05-01       Impact factor: 11.598

6.  Upf1 stimulates degradation of the product derived from aberrant messenger RNA containing a specific nonsense mutation by the proteasome.

Authors:  Kazushige Kuroha; Tsuyako Tatematsu; Toshifumi Inada
Journal:  EMBO Rep       Date:  2009-10-02       Impact factor: 8.807

Review 7.  Ribosome-based quality control of mRNA and nascent peptides.

Authors:  Carrie L Simms; Erica N Thomas; Hani S Zaher
Journal:  Wiley Interdiscip Rev RNA       Date:  2016-05-18       Impact factor: 9.957

Review 8.  The multiple lives of NMD factors: balancing roles in gene and genome regulation.

Authors:  Olaf Isken; Lynne E Maquat
Journal:  Nat Rev Genet       Date:  2008-09       Impact factor: 53.242

9.  Splicing-dependent NMD does not require the EJC in Schizosaccharomyces pombe.

Authors:  Jikai Wen; Saverio Brogna
Journal:  EMBO J       Date:  2010-04-01       Impact factor: 11.598

Review 10.  NMD: a multifaceted response to premature translational termination.

Authors:  Stephanie Kervestin; Allan Jacobson
Journal:  Nat Rev Mol Cell Biol       Date:  2012-10-17       Impact factor: 94.444

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