Literature DB >> 16809762

Tpa1p is part of an mRNP complex that influences translation termination, mRNA deadenylation, and mRNA turnover in Saccharomyces cerevisiae.

Kim M Keeling1, Joe Salas-Marco, Lev Z Osherovich, David M Bedwell.   

Abstract

In this report, we show that the Saccharomyces cerevisiae protein Tpa1p (for termination and polyadenylation) influences translation termination efficiency, mRNA poly(A) tail length, and mRNA stability. Tpa1p is encoded by the previously uncharacterized open reading frame YER049W. Yeast strains carrying a deletion of the TPA1 gene (tpa1Delta) exhibited increased readthrough of stop codons, and coimmunoprecipitation assays revealed that Tpa1p interacts with the translation termination factors eRF1 and eRF3. In addition, the tpa1Delta mutation led to a 1.5- to 2-fold increase in the half-lives of mRNAs degraded by the general 5'-->3' pathway or the 3'-->5' nonstop decay pathway. In contrast, this mutation did not have any affect on the nonsense-mediated mRNA decay pathway. Examination of mRNA poly(A) tail length revealed that poly(A) tails are longer than normal in a tpa1Delta strain. Consistent with a potential role in regulating poly(A) tail length, Tpa1p was also found to coimmunoprecipitate with the yeast poly(A) binding protein Pab1p. These results suggest that Tpa1p is a component of a messenger ribonucleoprotein complex bound to the 3' untranslated region of mRNAs that affects translation termination, deadenylation, and mRNA decay.

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Year:  2006        PMID: 16809762      PMCID: PMC1592710          DOI: 10.1128/MCB.02448-05

Source DB:  PubMed          Journal:  Mol Cell Biol        ISSN: 0270-7306            Impact factor:   4.272


  75 in total

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Journal:  Mol Cell       Date:  2003-12       Impact factor: 17.970

2.  Positive and negative regulation of poly(A) nuclease.

Authors:  David A Mangus; Matthew C Evans; Nathan S Agrin; Mandy Smith; Preetam Gongidi; Allan Jacobson
Journal:  Mol Cell Biol       Date:  2004-06       Impact factor: 4.272

3.  GTP hydrolysis by eRF3 facilitates stop codon decoding during eukaryotic translation termination.

Authors:  Joe Salas-Marco; David M Bedwell
Journal:  Mol Cell Biol       Date:  2004-09       Impact factor: 4.272

4.  The GTP-binding release factor eRF3 as a key mediator coupling translation termination to mRNA decay.

Authors:  Tetsuo Kobayashi; Yuji Funakoshi; Shin-Ichi Hoshino; Toshiaki Katada
Journal:  J Biol Chem       Date:  2004-08-26       Impact factor: 5.157

5.  A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae.

Authors:  M E Schmitt; T A Brown; B L Trumpower
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

6.  The yeast CBP1 gene produces two differentially regulated transcripts by alternative 3'-end formation.

Authors:  S A Mayer; C L Dieckmann
Journal:  Mol Cell Biol       Date:  1989-10       Impact factor: 4.272

7.  Global analysis of protein expression in yeast.

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8.  Inhibition of yeast ribonucleic acid polymerases by thiolutin.

Authors:  D J Tipper
Journal:  J Bacteriol       Date:  1973-10       Impact factor: 3.490

9.  Identification of factors regulating poly(A) tail synthesis and maturation.

Authors:  David A Mangus; Mandy M Smith; Jennifer M McSweeney; Allan Jacobson
Journal:  Mol Cell Biol       Date:  2004-05       Impact factor: 4.272

10.  Leaky termination at premature stop codons antagonizes nonsense-mediated mRNA decay in S. cerevisiae.

Authors:  Kim M Keeling; Jessica Lanier; Ming Du; Joe Salas-Marco; Lin Gao; Anisa Kaenjak-Angeletti; David M Bedwell
Journal:  RNA       Date:  2004-04       Impact factor: 4.942

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  31 in total

1.  Kinetic analysis reveals the ordered coupling of translation termination and ribosome recycling in yeast.

Authors:  Christopher J Shoemaker; Rachel Green
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-05       Impact factor: 11.205

Review 2.  Hydroxylation and translational adaptation to stress: some answers lie beyond the STOP codon.

Authors:  M J Katz; L Gándara; A L De Lella Ezcurra; P Wappner
Journal:  Cell Mol Life Sci       Date:  2016-02-13       Impact factor: 9.261

3.  Mechanism of mRNA deadenylation: evidence for a molecular interplay between translation termination factor eRF3 and mRNA deadenylases.

Authors:  Yuji Funakoshi; Yusuke Doi; Nao Hosoda; Naoyuki Uchida; Masanori Osawa; Ichio Shimada; Masafumi Tsujimoto; Tsutomu Suzuki; Toshiaki Katada; Shin-ichi Hoshino
Journal:  Genes Dev       Date:  2007-12-01       Impact factor: 11.361

4.  Mutants of the Paf1 complex alter phenotypic expression of the yeast prion [PSI+].

Authors:  Lisa A Strawn; Changyi A Lin; Elizabeth M H Tank; Morwan M Osman; Sarah A Simpson; Heather L True
Journal:  Mol Biol Cell       Date:  2009-02-18       Impact factor: 4.138

5.  Sudestada1, a Drosophila ribosomal prolyl-hydroxylase required for mRNA translation, cell homeostasis, and organ growth.

Authors:  Maximiliano J Katz; Julieta M Acevedo; Christoph Loenarz; Diego Galagovsky; Phebee Liu-Yi; Marcelo Pérez-Pepe; Armin Thalhammer; Rok Sekirnik; Wei Ge; Mariana Melani; María G Thomas; Sergio Simonetta; Graciela L Boccaccio; Christopher J Schofield; Matthew E Cockman; Peter J Ratcliffe; Pablo Wappner
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

6.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

Review 7.  Modulation of efficiency of translation termination in Saccharomyces cerevisiae.

Authors:  Anton A Nizhnikov; Kirill S Antonets; Sergey G Inge-Vechtomov; Irina L Derkatch
Journal:  Prion       Date:  2014-11-01       Impact factor: 3.931

Review 8.  Oxygen-responsive transcriptional regulation of lipid homeostasis in fungi: Implications for anti-fungal drug development.

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Journal:  Semin Cell Dev Biol       Date:  2017-08-26       Impact factor: 7.727

9.  Synergistic regulation of hyphal elongation by hypoxia, CO(2), and nutrient conditions controls the virulence of Candida albicans.

Authors:  Yang Lu; Chang Su; Norma V Solis; Scott G Filler; Haoping Liu
Journal:  Cell Host Microbe       Date:  2013-11-13       Impact factor: 21.023

10.  Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex.

Authors:  Hyoun Sook Kim; Hye Lee Kim; Kyoung Hoon Kim; Do Jin Kim; Sang Jae Lee; Ji Young Yoon; Hye Jin Yoon; Hyang Yeon Lee; Seung Bum Park; Soon-Jong Kim; Jae Young Lee; Se Won Suh
Journal:  Nucleic Acids Res       Date:  2009-12-29       Impact factor: 16.971

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