Literature DB >> 15528549

Saccharomyces cerevisiae engineered for xylose metabolism exhibits a respiratory response.

Yong-Su Jin1, Jose M Laplaza, Thomas W Jeffries.   

Abstract

Native strains of Saccharomyces cerevisiae do not assimilate xylose. S. cerevisiae engineered for d-xylose utilization through the heterologous expression of genes for aldose reductase (XYL1), xylitol dehydrogenase (XYL2), and d-xylulokinase (XYL3 or XKS1) produce only limited amounts of ethanol in xylose medium. In recombinant S. cerevisiae expressing XYL1, XYL2, and XYL3, mRNA transcript levels for glycolytic, fermentative, and pentose phosphate enzymes did not change significantly on glucose or xylose under aeration or oxygen limitation. However, expression of genes encoding the tricarboxylic acid cycle, respiration enzymes (HXK1, ADH2, COX13, NDI1, and NDE1), and regulatory proteins (HAP4 and MTH1) increased significantly when cells were cultivated on xylose, and the genes for respiration were even more elevated under oxygen limitation. These results suggest that recombinant S. cerevisiae does not recognize xylose as a fermentable carbon source and that respiratory proteins are induced in response to cytosolic redox imbalance; however, lower sugar uptake and growth rates on xylose might also induce transcripts for respiration. A petite respiration-deficient mutant (rho degrees ) of the engineered strain produced more ethanol and accumulated less xylitol from xylose. It formed characteristic colonies on glucose, but it did not grow on xylose. These results are consistent with the higher respiratory activity of recombinant S. cerevisiae when growing on xylose and with its inability to grow on xylose under anaerobic conditions.

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Year:  2004        PMID: 15528549      PMCID: PMC525251          DOI: 10.1128/AEM.70.11.6816-6825.2004

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  49 in total

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2.  Reconciling gene expression data with known genome-scale regulatory network structures.

Authors:  Markus J Herrgård; Markus W Covert; Bernhard Ø Palsson
Journal:  Genome Res       Date:  2003-10-14       Impact factor: 9.043

3.  Respiration-dependent utilization of sugars in yeasts: a determinant role for sugar transporters.

Authors:  Paola Goffrini; Iliana Ferrero; Claudia Donnini
Journal:  J Bacteriol       Date:  2002-01       Impact factor: 3.490

4.  Alcoholic Fermentation of d-Xylose by Yeasts.

Authors:  A Toivola; D Yarrow; E van den Bosch; J P van Dijken; W A Scheffers
Journal:  Appl Environ Microbiol       Date:  1984-06       Impact factor: 4.792

5.  Evolutionary engineering of Saccharomyces cerevisiae for anaerobic growth on xylose.

Authors:  Marco Sonderegger; Uwe Sauer
Journal:  Appl Environ Microbiol       Date:  2003-04       Impact factor: 4.792

6.  Deletion of the GRE3 aldose reductase gene and its influence on xylose metabolism in recombinant strains of Saccharomyces cerevisiae expressing the xylA and XKS1 genes.

Authors:  K L Träff; R R Otero Cordero; W H van Zyl; B Hahn-Hägerdal
Journal:  Appl Environ Microbiol       Date:  2001-12       Impact factor: 4.792

7.  Involvement of oxygen and mitochondrial function in the metabolism of D-xylulose by Saccharomyces cerevisiae.

Authors:  R Maleszka; H Schneider
Journal:  Arch Biochem Biophys       Date:  1984-01       Impact factor: 4.013

8.  Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function.

Authors:  Yong-Su Jin; Sharon Jones; Nian-Qing Shi; Thomas W Jeffries
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

9.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
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Authors:  N Q Shi; T W Jeffries
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2.  Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on D-xylose.

Authors:  Haiying Ni; José M Laplaza; Thomas W Jeffries
Journal:  Appl Environ Microbiol       Date:  2007-02-02       Impact factor: 4.792

3.  Enhanced expression of genes involved in initial xylose metabolism and the oxidative pentose phosphate pathway in the improved xylose-utilizing Saccharomyces cerevisiae through evolutionary engineering.

Authors:  Jian Zha; Minghua Shen; Menglong Hu; Hao Song; Yingjin Yuan
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4.  Metabolomic and (13)C-metabolic flux analysis of a xylose-consuming Saccharomyces cerevisiae strain expressing xylose isomerase.

Authors:  Thomas M Wasylenko; Gregory Stephanopoulos
Journal:  Biotechnol Bioeng       Date:  2014-11-24       Impact factor: 4.530

Review 5.  Rewiring yeast metabolism to synthesize products beyond ethanol.

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6.  Increased ethanol production by deletion of HAP4 in recombinant xylose-assimilating Saccharomyces cerevisiae.

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Journal:  J Ind Microbiol Biotechnol       Date:  2015-10-05       Impact factor: 3.346

7.  Limitations in xylose-fermenting Saccharomyces cerevisiae, made evident through comprehensive metabolite profiling and thermodynamic analysis.

Authors:  Mario Klimacek; Stefan Krahulec; Uwe Sauer; Bernd Nidetzky
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

8.  The impact of transcription factors Znf1, Sip4, Adr1, Tup1, and Hap4 on xylose alcoholic fermentation in the engineered yeast Saccharomyces cerevisiae.

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Journal:  Antonie Van Leeuwenhoek       Date:  2021-06-25       Impact factor: 2.271

Review 9.  Pichia stipitis genomics, transcriptomics, and gene clusters.

Authors:  Thomas W Jeffries; Jennifer R Headman Van Vleet
Journal:  FEMS Yeast Res       Date:  2009-04-27       Impact factor: 2.796

10.  Increased expression of the oxidative pentose phosphate pathway and gluconeogenesis in anaerobically growing xylose-utilizing Saccharomyces cerevisiae.

Authors:  David Runquist; Bärbel Hahn-Hägerdal; Maurizio Bettiga
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