Literature DB >> 17277207

Transposon mutagenesis to improve the growth of recombinant Saccharomyces cerevisiae on D-xylose.

Haiying Ni1, José M Laplaza, Thomas W Jeffries.   

Abstract

Saccharomyces cerevisiae L2612 transformed with genes for xylose reductase and xylitol dehydrogenase (XYL1 and XYL2) grows well on glucose but very poorly on d-xylose. When a gene for d-xylulokinase (XYL3 or XKS1) is overexpressed, growth on glucose is unaffected, but growth on xylose is blocked. Spontaneous or chemically induced mutants of this engineered yeast that would grow on xylose could, however, be obtained. We therefore used insertional transposon mutagenesis to identify two loci that can relieve this xylose-specific growth inhibition. One is within the open reading frame (ORF) of PHO13, and the other is approximately 500 bp upstream from the TAL1 ORF. Deletion of PHO13 or overexpression of TAL1 resulted in a phenotype similar to the insertional mutation events. Quantitative PCR showed that deletion of PHO13 increased transcripts for TAL1, indicating that the growth inhibition imposed by the overexpression of XYL3 on xylose can be relieved by an overexpression of transcripts for downstream enzymes. These results may be useful in constructing better xylose-fermenting S. cerevisiae strains.

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Year:  2007        PMID: 17277207      PMCID: PMC1855673          DOI: 10.1128/AEM.02564-06

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN: 0099-2240            Impact factor:   4.792


  20 in total

1.  Conversion of xylose to ethanol by recombinant Saccharomyces cerevisiae: importance of xylulokinase (XKS1) and oxygen availability.

Authors:  M H Toivari; A Aristidou; L Ruohonen; M Penttilä
Journal:  Metab Eng       Date:  2001-07       Impact factor: 9.783

2.  Xylulokinase overexpression in two strains of Saccharomyces cerevisiae also expressing xylose reductase and xylitol dehydrogenase and its effect on fermentation of xylose and lignocellulosic hydrolysate.

Authors:  B Johansson; C Christensson; T Hobley; B Hahn-Hägerdal
Journal:  Appl Environ Microbiol       Date:  2001-09       Impact factor: 4.792

3.  Partial purification and characterization of a phosphoprotein phosphatase from sperm plasma membrane.

Authors:  M Barua; A K Ghosh; G C Majumder
Journal:  Reprod Fertil Dev       Date:  1999       Impact factor: 2.311

Review 4.  Engineering yeasts for xylose metabolism.

Authors:  Thomas W Jeffries
Journal:  Curr Opin Biotechnol       Date:  2006-05-18       Impact factor: 9.740

5.  Multiple regulators of Ty1 transposition in Saccharomyces cerevisiae have conserved roles in genome maintenance.

Authors:  D T Scholes; M Banerjee; B Bowen; M J Curcio
Journal:  Genetics       Date:  2001-12       Impact factor: 4.562

6.  Molecular cloning of XYL3 (D-xylulokinase) from Pichia stipitis and characterization of its physiological function.

Authors:  Yong-Su Jin; Sharon Jones; Nian-Qing Shi; Thomas W Jeffries
Journal:  Appl Environ Microbiol       Date:  2002-03       Impact factor: 4.792

7.  A modified Saccharomyces cerevisiae strain that consumes L-Arabinose and produces ethanol.

Authors:  Jessica Becker; Eckhard Boles
Journal:  Appl Environ Microbiol       Date:  2003-07       Impact factor: 4.792

8.  Changing flux of xylose metabolites by altering expression of xylose reductase and xylitol dehydrogenase in recombinant Saccharomyces cerevisiae.

Authors:  Yong-Su Jin; Thomas W Jeffries
Journal:  Appl Biochem Biotechnol       Date:  2003       Impact factor: 2.926

9.  Transformation of yeast by lithium acetate/single-stranded carrier DNA/polyethylene glycol method.

Authors:  R Daniel Gietz; Robin A Woods
Journal:  Methods Enzymol       Date:  2002       Impact factor: 1.600

10.  Optimal growth and ethanol production from xylose by recombinant Saccharomyces cerevisiae require moderate D-xylulokinase activity.

Authors:  Yong-Su Jin; Haiying Ni; Jose M Laplaza; Thomas W Jeffries
Journal:  Appl Environ Microbiol       Date:  2003-01       Impact factor: 4.792

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  20 in total

1.  Deletion of PHO13, encoding haloacid dehalogenase type IIA phosphatase, results in upregulation of the pentose phosphate pathway in Saccharomyces cerevisiae.

Authors:  Soo Rin Kim; Haiqing Xu; Anastashia Lesmana; Uros Kuzmanovic; Matthew Au; Clarissa Florencia; Eun Joong Oh; Guochang Zhang; Kyoung Heon Kim; Yong-Su Jin
Journal:  Appl Environ Microbiol       Date:  2014-12-19       Impact factor: 4.792

2.  Limitations in xylose-fermenting Saccharomyces cerevisiae, made evident through comprehensive metabolite profiling and thermodynamic analysis.

Authors:  Mario Klimacek; Stefan Krahulec; Uwe Sauer; Bernd Nidetzky
Journal:  Appl Environ Microbiol       Date:  2010-10-01       Impact factor: 4.792

3.  Bulk segregant analysis by high-throughput sequencing reveals a novel xylose utilization gene from Saccharomyces cerevisiae.

Authors:  Jared W Wenger; Katja Schwartz; Gavin Sherlock
Journal:  PLoS Genet       Date:  2010-05-13       Impact factor: 5.917

4.  Co-fermentation of xylose and cellobiose by an engineered Saccharomyces cerevisiae.

Authors:  Kimberly A Aeling; Kirsty A Salmon; José M Laplaza; Ling Li; Jennifer R Headman; Alex H Hutagalung; Stephen Picataggio
Journal:  J Ind Microbiol Biotechnol       Date:  2012-08-05       Impact factor: 3.346

Review 5.  Improving industrial yeast strains: exploiting natural and artificial diversity.

Authors:  Jan Steensels; Tim Snoek; Esther Meersman; Martina Picca Nicolino; Karin Voordeckers; Kevin J Verstrepen
Journal:  FEMS Microbiol Rev       Date:  2014-05-08       Impact factor: 16.408

Review 6.  Saccharomyces cerevisiae strains for second-generation ethanol production: from academic exploration to industrial implementation.

Authors:  Mickel L A Jansen; Jasmine M Bracher; Ioannis Papapetridis; Maarten D Verhoeven; Hans de Bruijn; Paul P de Waal; Antonius J A van Maris; Paul Klaassen; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2017-08-01       Impact factor: 2.796

Review 7.  Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast.

Authors:  Bart Oud; Antonius J A van Maris; Jean-Marc Daran; Jack T Pronk
Journal:  FEMS Yeast Res       Date:  2012-01-10       Impact factor: 2.796

8.  D-Xylulose kinase from Saccharomyces cerevisiae: isolation and characterization of the highly unstable enzyme, recombinantly produced in Escherichia coli.

Authors:  Simone L Pival; Ruth Birner-Gruenberger; Corinna Krump; Bernd Nidetzky
Journal:  Protein Expr Purif       Date:  2011-06-02       Impact factor: 1.650

9.  Rational and evolutionary engineering approaches uncover a small set of genetic changes efficient for rapid xylose fermentation in Saccharomyces cerevisiae.

Authors:  Soo Rin Kim; Jeffrey M Skerker; Wei Kang; Anastashia Lesmana; Na Wei; Adam P Arkin; Yong-Su Jin
Journal:  PLoS One       Date:  2013-02-26       Impact factor: 3.240

10.  Systematic and evolutionary engineering of a xylose isomerase-based pathway in Saccharomyces cerevisiae for efficient conversion yields.

Authors:  Sun-Mi Lee; Taylor Jellison; Hal S Alper
Journal:  Biotechnol Biofuels       Date:  2014-08-20       Impact factor: 6.040

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