Literature DB >> 23325804

Phosphodeoxyribosyltransferases, designed enzymes for deoxyribonucleotides synthesis.

Pierre Alexandre Kaminski1, Gilles Labesse.   

Abstract

A large number of nucleoside analogues and 2'-deoxynucleoside triphosphates (dNTP) have been synthesized to interfere with DNA metabolism. However, in vivo the concentration and phosphorylation of these analogues are key limiting factors. In this context, we designed enzymes to switch nucleobases attached to a deoxyribose monophosphate. Active chimeras were made from two distantly related enzymes: a nucleoside deoxyribosyltransferase from lactobacilli and a 5'-monophosphate-2'-deoxyribonucleoside hydrolase from rat. Then their unprecedented activity was further extended to deoxyribose triphosphate, and in vitro biosyntheses could be successfully performed with several base analogues. These new enzymes provide new tools to synthesize dNTP analogues and to deliver them into cells.

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Year:  2013        PMID: 23325804      PMCID: PMC3585086          DOI: 10.1074/jbc.M112.446492

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  45 in total

1.  Syntheses of nucleoside triphosphates.

Authors:  K Burgess; D Cook
Journal:  Chem Rev       Date:  2000-06-14       Impact factor: 60.622

2.  RCL hydrolyzes 2'-deoxyribonucleoside 5'-monophosphate via formation of a reaction intermediate.

Authors:  Kiran Doddapaneni; Walter Zahurancik; Adam Haushalter; Chunhua Yuan; Jane Jackman; Zhengrong Wu
Journal:  Biochemistry       Date:  2011-05-03       Impact factor: 3.162

Review 3.  Overview of the synthesis of nucleoside phosphates and polyphosphates.

Authors:  David C Johnson; Theodore S Widlanski
Journal:  Curr Protoc Nucleic Acid Chem       Date:  2004-02

4.  Cloning and characterization of the multisubstrate deoxyribonucleoside kinase of Drosophila melanogaster.

Authors:  M Johansson; A R van Rompay; B Degrève; J Balzarini; A Karlsson
Journal:  J Biol Chem       Date:  1999-08-20       Impact factor: 5.157

5.  Protection-free one-pot synthesis of 2'-deoxynucleoside 5'-triphosphates and DNA polymerization.

Authors:  Julianne Caton-Williams; Matthew Smith; Nicolas Carrasco; Zhen Huang
Journal:  Org Lett       Date:  2011-07-26       Impact factor: 6.005

6.  Crystal structures of nucleoside 2-deoxyribosyltransferase in native and ligand-bound forms reveal architecture of the active site.

Authors:  S R Armstrong; W J Cook; S A Short; S E Ealick
Journal:  Structure       Date:  1996-01-15       Impact factor: 5.006

Review 7.  Enzyme (re)design: lessons from natural evolution and computation.

Authors:  John A Gerlt; Patricia C Babbitt
Journal:  Curr Opin Chem Biol       Date:  2009-02-23       Impact factor: 8.822

8.  Structure of the oncoprotein Rcl bound to three nucleotide analogues.

Authors:  André Padilla; Claire Amiable; Sylvie Pochet; Pierre Alexandre Kaminski; Gilles Labesse
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-01-19

9.  Identification of the active site nucleophile in nucleoside 2-deoxyribosyltransferase as glutamic acid 98.

Authors:  D J Porter; B M Merrill; S A Short
Journal:  J Biol Chem       Date:  1995-06-30       Impact factor: 5.157

10.  PubChem: a public information system for analyzing bioactivities of small molecules.

Authors:  Yanli Wang; Jewen Xiao; Tugba O Suzek; Jian Zhang; Jiyao Wang; Stephen H Bryant
Journal:  Nucleic Acids Res       Date:  2009-06-04       Impact factor: 16.971

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  2 in total

1.  N-Ribosyltransferase From Archaeoglobus veneficus: A Novel Halotolerant and Thermostable Biocatalyst for the Synthesis of Purine Ribonucleoside Analogs.

Authors:  Javier Acosta; Jon Del Arco; Victor Pisabarro; Federico Gago; Jesús Fernández-Lucas
Journal:  Front Bioeng Biotechnol       Date:  2020-06-16

2.  Rational Design of a Thermostable 2'-Deoxyribosyltransferase for Nelarabine Production by Prediction of Disulfide Bond Engineering Sites.

Authors:  Guillermo Cruz; Javier Acosta; Jose Miguel Mancheño; Jon Del Arco; Jesús Fernández-Lucas
Journal:  Int J Mol Sci       Date:  2022-10-05       Impact factor: 6.208

  2 in total

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