Literature DB >> 15489538

On the meaning and existence of an effective population size.

P Sjödin1, I Kaj, S Krone, M Lascoux, M Nordborg.   

Abstract

We investigate conditions under which a model with stochastic demography or population structure converges to the coalescent with a linear change in timescale. We argue that this is a necessary condition for the existence of a meaningful effective population size. We find that such a linear timescale change is obtained when demographic fluctuations and coalescence events occur on different timescales. Simple models of population structure and randomly fluctuating population size are used to exemplify the ideas and provide an intuitive feel for the meaning of the conditions.

Mesh:

Year:  2004        PMID: 15489538      PMCID: PMC1449138          DOI: 10.1534/genetics.104.026799

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  13 in total

1.  Origins of the coalescent. 1974-1982.

Authors:  J F Kingman
Journal:  Genetics       Date:  2000-12       Impact factor: 4.562

2.  The effective size of fluctuating populations.

Authors:  M Iizuka
Journal:  Theor Popul Biol       Date:  2001-06       Impact factor: 1.570

3.  Gene genealogies in a metapopulation.

Authors:  J Wakeley; N Aliacar
Journal:  Genetics       Date:  2001-10       Impact factor: 4.562

4.  The neutral theory in an infinite population.

Authors:  J H Gillespie
Journal:  Gene       Date:  2000-12-30       Impact factor: 3.688

5.  A neutral model with fluctuating population size and its effective size.

Authors:  Masaru Iizuka; Hidenori Tachida; Hirotsugu Matsuda
Journal:  Genetics       Date:  2002-05       Impact factor: 4.562

6.  Coalescent process with fluctuating population size and its effective size.

Authors:  Akinori Sano; Akinobu Shimizu; Masaru Iizuka
Journal:  Theor Popul Biol       Date:  2004-02       Impact factor: 1.570

7.  The coalescent and the genealogical process in geographically structured population.

Authors:  M Notohara
Journal:  J Math Biol       Date:  1990       Impact factor: 2.259

8.  Structured coalescent processes on different time scales.

Authors:  M Nordborg
Journal:  Genetics       Date:  1997-08       Impact factor: 4.562

9.  Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

Authors:  F Tajima
Journal:  Genetics       Date:  1989-11       Impact factor: 4.562

10.  Statistical tests of neutrality of mutations.

Authors:  Y X Fu; W H Li
Journal:  Genetics       Date:  1993-03       Impact factor: 4.562

View more
  53 in total

1.  Gene genealogies within a fixed pedigree, and the robustness of Kingman's coalescent.

Authors:  John Wakeley; Léandra King; Bobbi S Low; Sohini Ramachandran
Journal:  Genetics       Date:  2012-01-10       Impact factor: 4.562

2.  Linkage disequilibrium under recurrent bottlenecks.

Authors:  E Schaper; A Eriksson; M Rafajlovic; S Sagitov; B Mehlig
Journal:  Genetics       Date:  2011-11-02       Impact factor: 4.562

3.  James F. Crow and the stochastic theory of population genetics.

Authors:  Warren J Ewens
Journal:  Genetics       Date:  2012-02       Impact factor: 4.562

4.  The total branch length of sample genealogies in populations of variable size.

Authors:  A Eriksson; B Mehlig; M Rafajlovic; S Sagitov
Journal:  Genetics       Date:  2010-07-26       Impact factor: 4.562

5.  The effective size of populations infected with cytoplasmic sex-ratio distorters.

Authors:  Jan Engelstädter
Journal:  Genetics       Date:  2010-06-30       Impact factor: 4.562

6.  On the importance of being structured: instantaneous coalescence rates and human evolution--lessons for ancestral population size inference?

Authors:  O Mazet; W Rodríguez; S Grusea; S Boitard; L Chikhi
Journal:  Heredity (Edinb)       Date:  2015-12-09       Impact factor: 3.821

7.  Coalescent processes when the distribution of offspring number among individuals is highly skewed.

Authors:  Bjarki Eldon; John Wakeley
Journal:  Genetics       Date:  2006-02-01       Impact factor: 4.562

8.  The genealogical consequences of fecundity variance polymorphism.

Authors:  Jesse E Taylor
Journal:  Genetics       Date:  2009-05-11       Impact factor: 4.562

9.  Extensions of the coalescent effective population size.

Authors:  John Wakeley; Ori Sargsyan
Journal:  Genetics       Date:  2008-11-10       Impact factor: 4.562

10.  Quasi equilibrium, variance effective size and fixation index for populations with substructure.

Authors:  Ola Hössjer; Nils Ryman
Journal:  J Math Biol       Date:  2013-10-15       Impact factor: 2.259

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.