Literature DB >> 15466596

A novel GTPase activated by the small subunit of ribosome.

Hyouta Himeno1, Kyoko Hanawa-Suetsugu, Takatsugu Kimura, Kuniaki Takagi, Wakana Sugiyama, Shinobu Shirata, Tomoyuki Mikami, Fujiko Odagiri, Yukiko Osanai, Daisuke Watanabe, Simon Goto, Liliya Kalachnyuk, Chisato Ushida, Akira Muto.   

Abstract

The GTPase activity of Escherichia coli YjeQ, here named RsgA (ribosome small subunit-dependent GTPase A), has been shown to be significantly enhanced by ribosome or its small subunit. The enhancement of GTPase activity was inhibited by several aminoglycosides bound at the A site of the small subunit, but not by a P site-specific antibiotic. RsgA stably bound the small subunit in the presence of GDPNP, but not in the presence of GTP or GDP, to dissociate ribosome into subunits. Disruption of the gene for RsgA from the genome affected the growth of the cells, which predominantly contained the dissociated subunits having only a weak activation activity of RsgA. We also found that 17S RNA, a putative precursor of 16S rRNA, was contained in the small subunit of the ribosome from the RsgA-deletion strain. RsgA is a novel GTPase that might provide a new insight into the function of ribosome.

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Year:  2004        PMID: 15466596      PMCID: PMC521671          DOI: 10.1093/nar/gkh861

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  24 in total

1.  Crystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3.

Authors:  M Pioletti; F Schlünzen; J Harms; R Zarivach; M Glühmann; H Avila; A Bashan; H Bartels; T Auerbach; C Jacobi; T Hartsch; A Yonath; F Franceschi
Journal:  EMBO J       Date:  2001-04-17       Impact factor: 11.598

2.  Preparation of functional ribosomal complexes and effect of buffer conditions on tRNA positions observed by cryoelectron microscopy.

Authors:  G Blaha; U Stelzl; C M Spahn; R K Agrawal; J Frank; K H Nierhaus
Journal:  Methods Enzymol       Date:  2000       Impact factor: 1.600

3.  Crystal structure of an initiation factor bound to the 30S ribosomal subunit.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; T Hartsch; B T Wimberly; V Ramakrishnan
Journal:  Science       Date:  2001-01-19       Impact factor: 47.728

4.  Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.

Authors:  C Saveanu; D Bienvenu; A Namane; P E Gleizes; N Gas; A Jacquier; M Fromont-Racine
Journal:  EMBO J       Date:  2001-11-15       Impact factor: 11.598

Review 5.  Evolution of a molecular switch: universal bacterial GTPases regulate ribosome function.

Authors:  C E Caldon; P Yoong; P E March
Journal:  Mol Microbiol       Date:  2001-07       Impact factor: 3.501

6.  The path of messenger RNA through the ribosome.

Authors:  G Z Yusupova; M M Yusupov; J H Cate; H F Noller
Journal:  Cell       Date:  2001-07-27       Impact factor: 41.582

7.  Functional insights from the structure of the 30S ribosomal subunit and its interactions with antibiotics.

Authors:  A P Carter; W M Clemons; D E Brodersen; R J Morgan-Warren; B T Wimberly; V Ramakrishnan
Journal:  Nature       Date:  2000-09-21       Impact factor: 49.962

8.  The structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit.

Authors:  D E Brodersen; W M Clemons; A P Carter; R J Morgan-Warren; B T Wimberly; V Ramakrishnan
Journal:  Cell       Date:  2000-12-22       Impact factor: 41.582

9.  Bms1p, a novel GTP-binding protein, and the related Tsr1p are required for distinct steps of 40S ribosome biogenesis in yeast.

Authors:  D Gelperin; L Horton; J Beckman; J Hensold; S K Lemmon
Journal:  RNA       Date:  2001-09       Impact factor: 4.942

10.  Era, an essential Escherichia coli small G-protein, binds to the 30S ribosomal subunit.

Authors:  A Sayed; S i Matsuyama; M Inouye
Journal:  Biochem Biophys Res Commun       Date:  1999-10-14       Impact factor: 3.575

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  50 in total

1.  Cryo-electron microscopy structure of the 30S subunit in complex with the YjeQ biogenesis factor.

Authors:  Ahmad Jomaa; Geordie Stewart; Jason A Mears; Inga Kireeva; Eric D Brown; Joaquin Ortega
Journal:  RNA       Date:  2011-09-29       Impact factor: 4.942

2.  Role of the C-terminal tail of SmpB in the early stage of trans-translation.

Authors:  Daisuke Kurita; Akira Muto; Hyouta Himeno
Journal:  RNA       Date:  2010-03-26       Impact factor: 4.942

3.  RsgA releases RbfA from 30S ribosome during a late stage of ribosome biosynthesis.

Authors:  Simon Goto; Shingo Kato; Takatsugu Kimura; Akira Muto; Hyouta Himeno
Journal:  EMBO J       Date:  2010-11-23       Impact factor: 11.598

4.  Chemical modulators of ribosome biogenesis as biological probes.

Authors:  Jonathan M Stokes; Eric D Brown
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

5.  The yjeQ gene is required for virulence of Staphylococcus aureus.

Authors:  Tracey L Campbell; James Henderson; David E Heinrichs; Eric D Brown
Journal:  Infect Immun       Date:  2006-08       Impact factor: 3.441

6.  Multiple GTPases participate in the assembly of the large ribosomal subunit in Bacillus subtilis.

Authors:  Laura Schaefer; William C Uicker; Catherine Wicker-Planquart; Anne-Emmanuelle Foucher; Jean-Michel Jault; Robert A Britton
Journal:  J Bacteriol       Date:  2006-09-22       Impact factor: 3.490

7.  Identification of novel Escherichia coli ribosome-associated proteins using isobaric tags and multidimensional protein identification techniques.

Authors:  M Jiang; S M Sullivan; A K Walker; J R Strahler; P C Andrews; J R Maddock
Journal:  J Bacteriol       Date:  2007-03-02       Impact factor: 3.490

8.  The GTPase CpgA is implicated in the deposition of the peptidoglycan sacculus in Bacillus subtilis.

Authors:  Cédric Absalon; Kassem Hamze; Didier Blanot; Claude Frehel; Rut Carballido-Lopez; Barry I Holland; Jean van Heijenoort; Simone J Séror
Journal:  J Bacteriol       Date:  2008-03-14       Impact factor: 3.490

9.  Structure of the ribosomal interacting GTPase YjeQ from the enterobacterial species Salmonella typhimurium.

Authors:  C E Nichols; C Johnson; H K Lamb; M Lockyer; I G Charles; A R Hawkins; D K Stammers
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-10-24

10.  Structural aspects of RbfA action during small ribosomal subunit assembly.

Authors:  Partha P Datta; Daniel N Wilson; Masahito Kawazoe; Neil K Swami; Tatsuya Kaminishi; Manjuli R Sharma; Timothy M Booth; Chie Takemoto; Paola Fucini; Shigeyuki Yokoyama; Rajendra K Agrawal
Journal:  Mol Cell       Date:  2007-11-09       Impact factor: 17.970

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