Literature DB >> 15458641

Distribution and dynamics of chromatin modification induced by a defined DNA double-strand break.

Robert Shroff1, Ayelet Arbel-Eden, Duane Pilch, Grzegorz Ira, William M Bonner, John H Petrini, James E Haber, Michael Lichten.   

Abstract

BACKGROUND: In response to DNA double-strand breaks (DSBs), eukaryotic cells rapidly phosphorylate histone H2A isoform H2AX at a C-terminal serine (to form gamma-H2AX) and accumulate repair proteins at or near DSBs. To date, these events have been defined primarily at the resolution of light microscopes, and the relationship between gamma-H2AX formation and repair protein recruitment remains to be defined.
RESULTS: We report here the first molecular-level characterization of regional chromatin changes that accompany a DSB formed by the HO endonuclease in Saccharomyces cerevisiae. Break induction provoked rapid gamma-H2AX formation and equally rapid recruitment of the Mre11 repair protein. gamma-H2AX formation was efficiently promoted by both Tel1p and Mec1p, the yeast ATM and ATR homologs; in G1-arrested cells, most gamma-H2AX formation was dependent on Tel1 and Mre11. gamma-H2AX formed in a large (ca. 50 kb) region surrounding the DSB. Remarkably, very little gamma-H2AX could be detected in chromatin within 1-2 kb of the break. In contrast, this region contains almost all the Mre11p and other repair proteins that bind as a result of the break.
CONCLUSIONS: Both Mec1p and Tel1p can respond to a DSB, with distinct roles for these checkpoint kinases at different phases of the cell cycle. Part of this response involves histone phosphorylation over large chromosomal domains; however, the distinct distributions of gamma-H2AX and repair proteins near DSBs indicate that localization of repair proteins to breaks is not likely to be the main function of this histone modification.

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Year:  2004        PMID: 15458641      PMCID: PMC4493763          DOI: 10.1016/j.cub.2004.09.047

Source DB:  PubMed          Journal:  Curr Biol        ISSN: 0960-9822            Impact factor:   10.834


  74 in total

1.  A role for Saccharomyces cerevisiae histone H2A in DNA repair.

Authors:  J A Downs; N F Lowndes; S P Jackson
Journal:  Nature       Date:  2000 Dec 21-28       Impact factor: 49.962

Review 2.  A unified view of the DNA-damage checkpoint.

Authors:  Justine Melo; David Toczyski
Journal:  Curr Opin Cell Biol       Date:  2002-04       Impact factor: 8.382

3.  Transient stability of DNA ends allows nonhomologous end joining to precede homologous recombination.

Authors:  Marie Frank-Vaillant; Stéphane Marcand
Journal:  Mol Cell       Date:  2002-11       Impact factor: 17.970

4.  Choreography of the DNA damage response: spatiotemporal relationships among checkpoint and repair proteins.

Authors:  Michael Lisby; Jacqueline H Barlow; Rebecca C Burgess; Rodney Rothstein
Journal:  Cell       Date:  2004-09-17       Impact factor: 41.582

5.  MEC1-dependent redistribution of the Sir3 silencing protein from telomeres to DNA double-strand breaks.

Authors:  K D Mills; D A Sinclair; L Guarente
Journal:  Cell       Date:  1999-05-28       Impact factor: 41.582

6.  Rad52 forms DNA repair and recombination centers during S phase.

Authors:  M Lisby; R Rothstein; U H Mortensen
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-17       Impact factor: 11.205

7.  Histone H2AX phosphorylation is dispensable for the initial recognition of DNA breaks.

Authors:  Arkady Celeste; Oscar Fernandez-Capetillo; Michael J Kruhlak; Duane R Pilch; David W Staudt; Alicia Lee; Robert F Bonner; William M Bonner; André Nussenzweig
Journal:  Nat Cell Biol       Date:  2003-07       Impact factor: 28.824

8.  Yeast histone 2A serine 129 is essential for the efficient repair of checkpoint-blind DNA damage.

Authors:  Christophe Redon; Duane R Pilch; Emmy P Rogakou; Ann H Orr; Noel F Lowndes; William M Bonner
Journal:  EMBO Rep       Date:  2003-07       Impact factor: 8.807

9.  Role of DNA-PK in the cellular response to DNA double-strand breaks.

Authors:  Sandeep Burma; David J Chen
Journal:  DNA Repair (Amst)       Date:  2004 Aug-Sep

10.  DNA end resection, homologous recombination and DNA damage checkpoint activation require CDK1.

Authors:  Grzegorz Ira; Achille Pellicioli; Alitukiriza Balijja; Xuan Wang; Simona Fiorani; Walter Carotenuto; Giordano Liberi; Debra Bressan; Lihong Wan; Nancy M Hollingsworth; James E Haber; Marco Foiani
Journal:  Nature       Date:  2004-10-21       Impact factor: 49.962

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  224 in total

Review 1.  Reading chromatin: insights from yeast into YEATS domain structure and function.

Authors:  Julia M Schulze; Alice Y Wang; Michael S Kobor
Journal:  Epigenetics       Date:  2010-10-01       Impact factor: 4.528

Review 2.  Double-strand breaks and the concept of short- and long-term epigenetic memory.

Authors:  Christian Orlowski; Li-Jeen Mah; Raja S Vasireddy; Assam El-Osta; Tom C Karagiannis
Journal:  Chromosoma       Date:  2010-12-21       Impact factor: 4.316

Review 3.  Chromatin dynamics and the repair of DNA double strand breaks.

Authors:  Ye Xu; Brendan D Price
Journal:  Cell Cycle       Date:  2011-01-15       Impact factor: 4.534

4.  Dynamics of homology searching during gene conversion in Saccharomyces cerevisiae revealed by donor competition.

Authors:  Eric Coïc; Joshua Martin; Taehyun Ryu; Sue Yen Tay; Jané Kondev; James E Haber
Journal:  Genetics       Date:  2011-09-27       Impact factor: 4.562

Review 5.  Patching Broken DNA: Nucleosome Dynamics and the Repair of DNA Breaks.

Authors:  Ozge Gursoy-Yuzugullu; Nealia House; Brendan D Price
Journal:  J Mol Biol       Date:  2015-11-26       Impact factor: 5.469

6.  Yeast G1 DNA damage checkpoint regulation by H2A phosphorylation is independent of chromatin remodeling.

Authors:  Ali Javaheri; Robert Wysocki; Olivier Jobin-Robitaille; Mohammed Altaf; Jacques Côté; Stephen J Kron
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-29       Impact factor: 11.205

7.  Distinct roles for SWR1 and INO80 chromatin remodeling complexes at chromosomal double-strand breaks.

Authors:  Haico van Attikum; Olivier Fritsch; Susan M Gasser
Journal:  EMBO J       Date:  2007-08-30       Impact factor: 11.598

Review 8.  Chromatin dynamics: interplay between remodeling enzymes and histone modifications.

Authors:  Sarah G Swygert; Craig L Peterson
Journal:  Biochim Biophys Acta       Date:  2014-02-28

9.  Transcription of a donor enhances its use during double-strand break-induced gene conversion in human cells.

Authors:  Ezra Schildkraut; Cheryl A Miller; Jac A Nickoloff
Journal:  Mol Cell Biol       Date:  2006-04       Impact factor: 4.272

10.  Tbf1 and Vid22 promote resection and non-homologous end joining of DNA double-strand break ends.

Authors:  Diego Bonetti; Savani Anbalagan; Giovanna Lucchini; Michela Clerici; Maria Pia Longhese
Journal:  EMBO J       Date:  2012-12-07       Impact factor: 11.598

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