Literature DB >> 16503637

Modulation of reactivity and conformation within the T-quaternary state of human hemoglobin: the combined use of mutagenesis and sol-gel encapsulation.

Uri Samuni1, Camille J Roche, David Dantsker, Laura J Juszczak, Joel M Friedman.   

Abstract

A range of conformationally distinct functional states within the T quaternary state of hemoglobin are accessed and probed using a combination of mutagenesis and sol-gel encapsulation that greatly slow or eliminate the T --> R transition. Visible and UV resonance Raman spectroscopy are used to probe the proximal strain at the heme and the status of the alpha(1)beta(2) interface, respectively, whereas CO geminate and bimolecular recombination traces in conjunction with MEM (maximum entropy method) analysis of kinetic populations are used to identify functionally distinct T-state populations. The mutants used in this study are Hb(Nbeta102A) and the alpha99-alpha99 cross-linked derivative of Hb(Wbeta37E). The former mutant, which binds oxygen noncooperatively with very low affinity, is used to access low-affinity ligated T-state conformations, whereas the latter mutant is used to access the high-affinity end of the distribution of T-state conformations. A pattern emerges within the T state in which ligand reactivity increases as both the proximal strain and the alpha(1)beta(2) interface interactions are progressively lessened after ligand binding to the deoxy T-state species. The ligation and effector-dependent interplay between the heme environment and the stability of the Trp beta37 cluster in the hinge region of the alpha(1)beta(2) interface appears to determine the distribution of the ligated T-state species generated upon ligand binding. A qualitative model is presented, suggesting that different T quaternary structures modulate the stability of different alphabeta dimer conformations within the tetramer.

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Year:  2006        PMID: 16503637      PMCID: PMC3558951          DOI: 10.1021/bi050010i

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  95 in total

1.  Isolation and characterization of a new hemoglobin derivative cross-linked between the alpha chains (lysine 99 alpha 1----lysine 99 alpha 2).

Authors:  R Chatterjee; E V Welty; R Y Walder; S L Pruitt; P H Rogers; A Arnone; J A Walder
Journal:  J Biol Chem       Date:  1986-07-25       Impact factor: 5.157

2.  An allosteric model of hemoglobin.

Authors:  R G Shulman; S Ogawa; J J Hopfield
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1972

3.  Quaternary-transformation-induced changes at the heme in deoxyhemoglobins.

Authors:  M R Ondrias; D L Rousseau; J A Shelnutt; S R Simon
Journal:  Biochemistry       Date:  1982-07-06       Impact factor: 3.162

4.  The crystal structure of human deoxyhaemoglobin at 1.74 A resolution.

Authors:  G Fermi; M F Perutz; B Shaanan; R Fourme
Journal:  J Mol Biol       Date:  1984-05-15       Impact factor: 5.469

5.  Structure, dynamics, and reactivity in hemoglobin.

Authors:  J M Friedman
Journal:  Science       Date:  1985-06-14       Impact factor: 47.728

6.  Transient Raman study of CO-haemoprotein photolysis: origin of the quantum yield.

Authors:  J M Friedman; K B Lyons
Journal:  Nature       Date:  1980-04-10       Impact factor: 49.962

7.  Transient Raman study of hemoglobin: structural dependence of the iron-histidine linkage.

Authors:  J M Friedman; D L Rousseau; M R Ondrias; R A Stepnoski
Journal:  Science       Date:  1982-12-17       Impact factor: 47.728

8.  Spectroscopic and functional characterization of T state hemoglobin conformations encapsulated in silica gels.

Authors:  Uri Samuni; David Dantsker; Laura J Juszczak; Stefano Bettati; Luca Ronda; Andrea Mozzarelli; Joel M Friedman
Journal:  Biochemistry       Date:  2004-11-02       Impact factor: 3.162

9.  The iron-proximal histidine linkage and protein control of oxygen binding in hemoglobin. A transient Raman study.

Authors:  J M Friedman; T W Scott; R A Stepnoski; M Ikeda-Saito; T Yonetani
Journal:  J Biol Chem       Date:  1983-09-10       Impact factor: 5.157

10.  Nanosecond optical spectra of iron-cobalt hybrid hemoglobins: geminate recombination, conformational changes, and intersubunit communication.

Authors:  J Hofrichter; E R Henry; J H Sommer; R Deutsch; M Ikeda-Saito; T Yonetani; W A Eaton
Journal:  Biochemistry       Date:  1985-05-21       Impact factor: 3.162

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  21 in total

1.  Circular dichroism spectroscopy of tertiary and quaternary conformations of human hemoglobin entrapped in wet silica gels.

Authors:  Luca Ronda; Stefano Bruno; Cristiano Viappiani; Stefania Abbruzzetti; Andrea Mozzarelli; Kenneth C Lowe; Stefano Bettati
Journal:  Protein Sci       Date:  2006-07-05       Impact factor: 6.725

2.  Folding and assembly of hemoglobin monitored by electrospray mass spectrometry using an on-line dialysis system.

Authors:  Brian L Boys; Lars Konermann
Journal:  J Am Soc Mass Spectrom       Date:  2006-09-18       Impact factor: 3.109

Review 3.  Ligand recombination and a hierarchy of solvent slaved dynamics: the origin of kinetic phases in hemeproteins.

Authors:  Uri Samuni; David Dantsker; Camille J Roche; Joel M Friedman
Journal:  Gene       Date:  2007-05-10       Impact factor: 3.688

4.  A quantum-chemical picture of hemoglobin affinity.

Authors:  R E Alcantara; C Xu; T G Spiro; V Guallar
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-14       Impact factor: 11.205

5.  Ligand binding to truncated hemoglobin N from Mycobacterium tuberculosis is strongly modulated by the interplay between the distal heme pocket residues and internal water.

Authors:  Yannick H Ouellet; Richard Daigle; Patrick Lagüe; David Dantsker; Mario Milani; Martino Bolognesi; Joel M Friedman; Michel Guertin
Journal:  J Biol Chem       Date:  2008-08-02       Impact factor: 5.157

6.  Steric factors moderate conformational fluidity and contribute to the high proton sensitivity of Root effect hemoglobins.

Authors:  Celia Bonaventura; Robert Henkens; Joel Friedman; Claire J Parker Siburt; Daniel Kraiter; Alvin L Crumbliss
Journal:  Biochim Biophys Acta       Date:  2011-07-08

7.  Heme reactivity is uncoupled from quaternary structure in gel-encapsulated hemoglobin: a resonance Raman spectroscopic study.

Authors:  Eric M Jones; Gurusamy Balakrishnan; Thomas G Spiro
Journal:  J Am Chem Soc       Date:  2012-02-09       Impact factor: 15.419

8.  Tertiary and quaternary allostery in tetrameric hemoglobin from Scapharca inaequivalvis.

Authors:  Luca Ronda; Stefano Bettati; Eric R Henry; Tara Kashav; Jeffrey M Sanders; William E Royer; Andrea Mozzarelli
Journal:  Biochemistry       Date:  2013-03-15       Impact factor: 3.162

9.  Interfacial and distal-heme pocket mutations exhibit additive effects on the structure and function of hemoglobin.

Authors:  David H Maillett; Virgil Simplaceanu; Tong-Jian Shen; Nancy T Ho; John S Olson; Chien Ho
Journal:  Biochemistry       Date:  2008-09-13       Impact factor: 3.162

10.  Generating S-nitrosothiols from hemoglobin: mechanisms, conformational dependence, and physiological relevance.

Authors:  Camille J Roche; Maria B Cassera; David Dantsker; Rhoda Elison Hirsch; Joel M Friedman
Journal:  J Biol Chem       Date:  2013-06-17       Impact factor: 5.157

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