Literature DB >> 19688266

Chaos game representation of human pallidal spike trains.

Mahta Rasouli, Golta Rasouli, Fredrick A Lenz, Donald S Borrett, Leo Verhagen, Hon C Kwan.   

Abstract

Many studies have demonstrated the presence of scale invariance and long-range correlation in animal and human neuronal spike trains. The methodologies to extract the fractal or scale-invariant properties, however, do not address the issue as to the existence within the train of fine temporal structures embedded in the global fractal organisation. The present study addresses this question in human spike trains by the chaos game representation (CGR) approach, a graphical analysis with which specific temporal sequences reveal themselves as geometric structures in the graphical representation. The neuronal spike train data were obtained from patients whilst undergoing pallidotomy. Using this approach, we observed highly structured regions in the representation, indicating the presence of specific preferred sequences of interspike intervals within the train. Furthermore, we observed that for a given spike train, the higher the magnitude of its scaling exponent, the more pronounced the geometric patterns in the representation and, hence, higher probability of occurrence of specific subsequences. Given its ability to detect and specify in detail the preferred sequences of interspike intervals, we believe that CGR is a useful adjunct to the existing set of methodologies for spike train analysis.

Entities:  

Year:  2009        PMID: 19688266      PMCID: PMC2825310          DOI: 10.1007/s10867-009-9172-x

Source DB:  PubMed          Journal:  J Biol Phys        ISSN: 0092-0606            Impact factor:   1.365


  20 in total

1.  Genomic signature: characterization and classification of species assessed by chaos game representation of sequences.

Authors:  P J Deschavanne; A Giron; J Vilain; G Fagot; B Fertil
Journal:  Mol Biol Evol       Date:  1999-10       Impact factor: 16.240

Review 2.  Scaling in nature: from DNA through heartbeats to weather.

Authors:  S Havlin; S V Buldyrev; A Bunde; A L Goldberger; C K Peng; H E Stanley
Journal:  Physica A       Date:  1999-11-01       Impact factor: 3.263

Review 3.  Scale invariance in biology: coincidence or footprint of a universal mechanism?

Authors:  T Gisiger
Journal:  Biol Rev Camb Philos Soc       Date:  2001-05

4.  Analysis of genomic sequences by Chaos Game Representation.

Authors:  J S Almeida; J A Carriço; A Maretzek; P A Noble; M Fletcher
Journal:  Bioinformatics       Date:  2001-05       Impact factor: 6.937

5.  RANDOM WALK MODELS FOR THE SPIKE ACTIVITY OF A SINGLE NEURON.

Authors:  G L GERSTEIN; B MANDELBROT
Journal:  Biophys J       Date:  1964-01       Impact factor: 4.033

Review 6.  Searching for significance in spatio-temporal firing patterns.

Authors:  George L Gerstein
Journal:  Acta Neurobiol Exp (Wars)       Date:  2004       Impact factor: 1.579

Review 7.  Variability of spike trains and the processing of temporal patterns of acoustic signals-problems, constraints, and solutions.

Authors:  B Ronacher; A Franz; S Wohlgemuth; R M Hennig
Journal:  J Comp Physiol A Neuroethol Sens Neural Behav Physiol       Date:  2004-02-11       Impact factor: 1.836

8.  Chaos game representation of proteins.

Authors:  S Basu; A Pan; C Dutta; J Das
Journal:  J Mol Graph Model       Date:  1997-10       Impact factor: 2.518

Review 9.  Microelectrode recording and stimulation techniques during stereotactic procedures in the thalamus and pallidum.

Authors:  A S Mandir; L H Rowland; P M Dougherty; F A Lenz
Journal:  Adv Neurol       Date:  1997

10.  Fractal characteristics of human Parkinsonian neuronal spike trains.

Authors:  G Rasouli; M Rasouli; F A Lenz; L Verhagen; D S Borrett; H C Kwan
Journal:  Neuroscience       Date:  2006-03-03       Impact factor: 3.590

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  2 in total

1.  Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.

Authors:  Susana Vinga; Alexandra M Carvalho; Alexandre P Francisco; Luís Ms Russo; Jonas S Almeida
Journal:  Algorithms Mol Biol       Date:  2012-05-02       Impact factor: 1.405

2.  Phylogenetic analysis of H7N9 avian influenza virus based on a novel mathematical descriptor.

Authors:  Yusheng Bai; Tingting Ma; Yuhua Yao; Qi Dai; Ping-an He
Journal:  Biomed Res Int       Date:  2014-06-16       Impact factor: 3.411

  2 in total

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