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Literature DB >> 15365194

Semi-automated population of an online database of neuronal models (ModelDB) with citation information, using PubMed for validation.

Andrew P Davison¹, Thomas M Morse, Michele Migliore, Gordon M Shepherd, Michael L Hines.

Abstract

Citations play an important role in medical and scientific databases by indicating the authoritative source of the data. Manual citation entry is tedious and prone to errors. We describe a method and make available computer scripts which automate the process of citation entry. We use an open citation project PERL module (PARSER) for parsing citation data that is then used to retrieve PubMed records to supply the (validated) reference. Our PERL scripts are available via a link in the web references section of this article.

Mesh：

Year: 2004 PMID： 15365194 PMCID： PMC3752282 DOI： 10.1385/NI:2:3:327

Source DB: PubMed Journal: Neuroinformatics ISSN： 1539-2791

5 in total

1. Database tools for integrating and searching membrane property data correlated with neuronal morphology.

Authors: J S Mirsky; P M Nadkarni; M D Healy; P L Miller; G M Shepherd
Journal: J Neurosci Methods Date: 1998-07-01 Impact factor: 2.390

2. Achieving evolvable Web-database bioscience applications using the EAV/CR framework: recent advances.

Authors: Luis Marenco; Nicholas Tosches; Chiquito Crasto; Gordon Shepherd; Perry L Miller; Prakash M Nadkarni
Journal: J Am Med Inform Assoc Date: 2003-06-04 Impact factor: 4.497

3. Text mining neuroscience journal articles to populate neuroscience databases.

Authors: Chiquito J Crasto; Luis N Marenco; Michele Migliore; Buqing Mao; Prakash M Nadkarni; Perry Miller; Gordon M Shepherd
Journal: Neuroinformatics Date: 2003

4. ModelDB: making models publicly accessible to support computational neuroscience.

Authors: Michele Migliore; Thomas M Morse; Andrew P Davison; Luis Marenco; Gordon M Shepherd; Michael L Hines
Journal: Neuroinformatics Date: 2003

5. Integration of multidisciplinary sensory data: a pilot model of the human brain project approach.

Authors: P L Miller; P Nadkarni; M Singer; L Marenco; M Hines; G Shepherd
Journal: J Am Med Inform Assoc Date: 2001 Jan-Feb Impact factor: 4.497

5 in total

11 in total

1. A cross-platform freeware tool for digital reconstruction of neuronal arborizations from image stacks.

Authors: Kerry M Brown; Duncan E Donohue; Giampaolo D'Alessandro; Giorgio A Ascoli
Journal: Neuroinformatics Date: 2005

2. Signal propagation in oblique dendrites of CA1 pyramidal cells.

Authors: Michele Migliore; Michele Ferrante; Giorgio A Ascoli
Journal: J Neurophysiol Date: 2005-12 Impact factor: 2.714

Review 3. The impact of the NIH public access policy on literature informatics: What role can the neuroinformaticists play?

Authors: William Bug
Journal: Neuroinformatics Date: 2005

4. Computational simulation of the input-output relationship in hippocampal pyramidal cells.

Authors: Xiaoshen Li; Giorgio A Ascoli
Journal: J Comput Neurosci Date: 2006-07-25 Impact factor: 1.621

5. Neural Query System: Data-mining from within the NEURON simulator.

Authors: William W Lytton
Journal: Neuroinformatics Date: 2006

6. A hybrid approach to shape-based interpolation of stereotactic atlases of the human brain.

Authors: Jimin Liu; Wieslaw L Nowinski
Journal: Neuroinformatics Date: 2006

7. SenseLab: new developments in disseminating neuroscience information.

Authors: Chiquito J Crasto; Luis N Marenco; Nian Liu; Thomas M Morse; Kei-Hoi Cheung; Peter C Lai; Gautam Bahl; Peter Masiar; Hugo Y K Lam; Ernest Lim; Huajin Chen; Prakash Nadkarni; Michele Migliore; Perry L Miller; Gordon M Shepherd
Journal: Brief Bioinform Date: 2007-05-17 Impact factor: 11.622