Literature DB >> 17510162

SenseLab: new developments in disseminating neuroscience information.

Chiquito J Crasto1, Luis N Marenco, Nian Liu, Thomas M Morse, Kei-Hoi Cheung, Peter C Lai, Gautam Bahl, Peter Masiar, Hugo Y K Lam, Ernest Lim, Huajin Chen, Prakash Nadkarni, Michele Migliore, Perry L Miller, Gordon M Shepherd.   

Abstract

This article presents the latest developments in neuroscience information dissemination through the SenseLab suite of databases: NeuronDB, CellPropDB, ORDB, OdorDB, OdorMapDB, ModelDB and BrainPharm. These databases include information related to: (i) neuronal membrane properties and neuronal models, and (ii) genetics, genomics, proteomics and imaging studies of the olfactory system. We describe here: the new features for each database, the evolution of SenseLab's unifying database architecture and instances of SenseLab database interoperation with other neuroscience online resources.

Mesh：

Year:  2007        PMID： 17510162      PMCID： PMC2756159          DOI： 10.1093/bib/bbm018

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN： 1467-5463            Impact factor:   11.622


  52 in total

1.  The Database of Quantitative Cellular Signaling: management and analysis of chemical kinetic models of signaling networks.

Authors:  Sudhir Sivakumaran; Sridhar Hariharaputran; Jyoti Mishra; Upinder S Bhalla
Journal:  Bioinformatics       Date:  2003-02-12       Impact factor: 6.937

2.  ModelDB: A Database to Support Computational Neuroscience.

Authors:  Michael L Hines; Thomas Morse; Michele Migliore; Nicholas T Carnevale; Gordon M Shepherd
Journal:  J Comput Neurosci       Date:  2004 Jul-Aug       Impact factor: 1.621

3.  ModelDB: making models publicly accessible to support computational neuroscience.

Authors:  Michele Migliore; Thomas M Morse; Andrew P Davison; Luis Marenco; Gordon M Shepherd; Michael L Hines
Journal:  Neuroinformatics       Date:  2003

4.  CoCoDat: a database system for organizing and selecting quantitative data on single neurons and neuronal microcircuitry.

Authors:  J Dyhrfjeld-Johnsen; J Maier; D Schubert; J Staiger; H J Luhmann; K E Stephan; R Kötter
Journal:  J Neurosci Methods       Date:  2005-02-15       Impact factor: 2.390

5.  ResourceLog: an embeddable tool for dynamically monitoring the usage of web-based bioscience resources.

Authors:  Nian Liu; Luis Marenco; Perry L Miller
Journal:  J Am Med Inform Assoc       Date:  2006-04-18       Impact factor: 4.497

6.  Integration of multidisciplinary sensory data: a pilot model of the human brain project approach.

Authors:  P L Miller; P Nadkarni; M Singer; L Marenco; M Hines; G Shepherd
Journal:  J Am Med Inform Assoc       Date:  2001 Jan-Feb       Impact factor: 4.497

7.  Alzheimer Research Forum live discussion: insulin resistance: a common axis linking Alzheimer's, depression, and metabolism?

Authors:  June Kinoshita; Anne Fagan; David Ewbank; Michael Marlatt; Patricia Heyn; Suzanne de la Monte; Nancy Emerson Lombardo
Journal:  J Alzheimers Dis       Date:  2006-03       Impact factor: 4.472

8.  BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.

Authors:  Nicolas Le Novère; Benjamin Bornstein; Alexander Broicher; Mélanie Courtot; Marco Donizelli; Harish Dharuri; Lu Li; Herbert Sauro; Maria Schilstra; Bruce Shapiro; Jacky L Snoep; Michael Hucka
Journal:  Nucleic Acids Res       Date:  2006-01-01       Impact factor: 16.971

9.  AlzPharm: integration of neurodegeneration data using RDF.

Authors:  Hugo Y K Lam; Luis Marenco; Tim Clark; Yong Gao; June Kinoshita; Gordon Shepherd; Perry Miller; Elizabeth Wu; Gwendolyn T Wong; Nian Liu; Chiquito Crasto; Thomas Morse; Susie Stephens; Kei-Hoi Cheung
Journal:  BMC Bioinformatics       Date:  2007-05-09       Impact factor: 3.169

10.  The human olfactory receptor repertoire.

Authors:  S Zozulya; F Echeverri; T Nguyen
Journal:  Genome Biol       Date:  2001-06-01       Impact factor: 13.583
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  14 in total

Review 1.  Sharing and reusing gene expression profiling data in neuroscience.

Authors:  Xiang Wan; Paul Pavlidis
Journal:  Neuroinformatics       Date:  2007

2.  Approaches to neuroscience data integration.

Authors:  Kei-Hoi Cheung; Ernest Lim; Matthias Samwald; Huajun Chen; Luis Marenco; Matthew E Holford; Thomas M Morse; Pradeep Mutalik; Gordon M Shepherd; Perry L Miller
Journal:  Brief Bioinform       Date:  2009-07       Impact factor: 11.622

Review 3.  Computational models of neuronal biophysics and the characterization of potential neuropharmacological targets.

Authors:  Michele Ferrante; Kim T Blackwell; Michele Migliore; Giorgio A Ascoli
Journal:  Curr Med Chem       Date:  2008       Impact factor: 4.530

4.  The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience.

Authors:  William J Bug; Giorgio A Ascoli; Jeffrey S Grethe; Amarnath Gupta; Christine Fennema-Notestine; Angela R Laird; Stephen D Larson; Daniel Rubin; Gordon M Shepherd; Jessica A Turner; Maryann E Martone
Journal:  Neuroinformatics       Date:  2008-10-31

5.  Entrez Neuron RDFa: a pragmatic semantic web application for data integration in neuroscience research.

Authors:  Matthias Samwald; Ernest Lim; Peter Masiar; Luis Marenco; Huajun Chen; Thomas Morse; Pradeep Mutalik; Gordon Shepherd; Perry Miller; Kei-Hoi Cheung
Journal:  Stud Health Technol Inform       Date:  2009

6.  A working memory model for serial order that stores information in the intrinsic excitability properties of neurons.

Authors:  Eduardo Conde-Sousa; Paulo Aguiar
Journal:  J Comput Neurosci       Date:  2013-03-29       Impact factor: 1.621

7.  Semantic SenseLab: Implementing the vision of the Semantic Web in neuroscience.

Authors:  Matthias Samwald; Huajun Chen; Alan Ruttenberg; Ernest Lim; Luis Marenco; Perry Miller; Gordon Shepherd; Kei-Hoi Cheung
Journal:  Artif Intell Med       Date:  2009-12-16       Impact factor: 5.326

8.  Databases in SenseLab for the genomics, proteomics, and function of olfactory receptors.

Authors:  Luis N Marenco; Gautam Bahl; Lorra Hyland; Jing Shi; Rixin Wang; Peter C Lai; Perry L Miller; Gordon M Shepherd; Chiquito J Crasto
Journal:  Methods Mol Biol       Date:  2013

9.  Integration of Neuroimaging and Microarray Datasets through Mapping and Model-Theoretic Semantic Decomposition of Unstructured Phenotypes.

Authors:  Spiro P Pantazatos; Jianrong Li; Paul Pavlidis; Yves A Lussier
Journal:  Cancer Inform       Date:  2009-06-08

10.  SuperScent--a database of flavors and scents.

Authors:  Mathias Dunkel; Ulrike Schmidt; Swantje Struck; Lena Berger; Bjoern Gruening; Julia Hossbach; Ines S Jaeger; Uta Effmert; Birgit Piechulla; Roger Eriksson; Jette Knudsen; Robert Preissner
Journal:  Nucleic Acids Res       Date:  2008-10-17       Impact factor: 16.971
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