Literature DB >> 15355081

Boolean logic functions of a synthetic peptide network.

Gonen Ashkenasy1, M Reza Ghadiri.   

Abstract

Living cells can process rapidly and simultaneously multiple extracellular input signals through the complex networks of evolutionary selected biomolecular interactions and chemical transformations. Recent approaches to molecular computation have increasingly sought to mimic or exploit various aspects of biology. A number of studies have adapted nucleic acids and proteins to the design of molecular logic gates and computational systems, while other works have affected computation in living cells via biochemical pathway engineering. Here we report that de novo designed synthetic peptide networks can also mimic some of the basic logic functions of the more complex biological networks. We show that segments of a small network whose graph structure is composed of five nodes and 15 directed edges can express OR, NOR, and NOTIF logic.

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Year:  2004        PMID: 15355081      PMCID: PMC1829323          DOI: 10.1021/ja046745c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  39 in total

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Review 6.  A bacterial cell-cycle regulatory network operating in time and space.

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7.  Parallel molecular computations of pairwise exclusive-or (XOR) using DNA "string tile" self-assembly.

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Journal:  J Am Chem Soc       Date:  2003-11-26       Impact factor: 15.419

8.  Hierarchical organization of modularity in metabolic networks.

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9.  Molecular computation of solutions to combinatorial problems.

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  15 in total

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2.  Design of molecular logic devices based on a programmable DNA-regulated semisynthetic enzyme.

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Review 4.  Biocomputers: from test tubes to live cells.

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Journal:  Mol Biosyst       Date:  2009-04-15

5.  DNA as a universal substrate for chemical kinetics.

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Review 6.  Dynamic DNA nanotechnology using strand-displacement reactions.

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Journal:  Nat Chem       Date:  2011-02       Impact factor: 24.427

7.  Design of a biochemical circuit motif for learning linear functions.

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Journal:  J R Soc Interface       Date:  2014-12-06       Impact factor: 4.118

8.  Biocomputing based on particle disassembly.

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Journal:  Nat Nanotechnol       Date:  2014-08-17       Impact factor: 39.213

9.  Molecular insights on the cyclic peptide nanotube-mediated transportation of antitumor drug 5-fluorouracil.

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10.  Intelligent medical diagnostics via molecular logic.

Authors:  Tania Konry; David R Walt
Journal:  J Am Chem Soc       Date:  2009-09-23       Impact factor: 15.419

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