Literature DB >> 12202830

Hierarchical organization of modularity in metabolic networks.

E Ravasz1, A L Somera, D A Mongru, Z N Oltvai, A L Barabási.   

Abstract

Spatially or chemically isolated functional modules composed of several cellular components and carrying discrete functions are considered fundamental building blocks of cellular organization, but their presence in highly integrated biochemical networks lacks quantitative support. Here, we show that the metabolic networks of 43 distinct organisms are organized into many small, highly connected topologic modules that combine in a hierarchical manner into larger, less cohesive units, with their number and degree of clustering following a power law. Within Escherichia coli, the uncovered hierarchical modularity closely overlaps with known metabolic functions. The identified network architecture may be generic to system-level cellular organization.

Entities:  

Mesh:

Year:  2002        PMID: 12202830     DOI: 10.1126/science.1073374

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  983 in total

1.  Assessing experimentally derived interactions in a small world.

Authors:  Debra S Goldberg; Frederick P Roth
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-03       Impact factor: 11.205

2.  Protein complexes and functional modules in molecular networks.

Authors:  Victor Spirin; Leonid A Mirny
Journal:  Proc Natl Acad Sci U S A       Date:  2003-09-29       Impact factor: 11.205

3.  Visualization and interpretation of protein networks in Mycobacterium tuberculosis based on hierarchical clustering of genome-wide functional linkage maps.

Authors:  Michael Strong; Thomas G Graeber; Morgan Beeby; Matteo Pellegrini; Michael J Thompson; Todd O Yeates; David Eisenberg
Journal:  Nucleic Acids Res       Date:  2003-12-15       Impact factor: 16.971

4.  OWL-NETS: Transforming OWL Representations for Improved Network Inference.

Authors:  Tiffany J Callahan; William A Baumgartner; Michael Bada; Adrianne L Stefanski; Ignacio Tripodi; Elizabeth K White; Lawrence E Hunter
Journal:  Pac Symp Biocomput       Date:  2018

5.  Molecular basis for evolving modularity in the yeast protein interaction network.

Authors:  Ariel Fernández
Journal:  PLoS Comput Biol       Date:  2007-11       Impact factor: 4.475

6.  A developmental transcriptional network for maize defines coexpression modules.

Authors:  Gregory S Downs; Yong-Mei Bi; Joseph Colasanti; Wenqing Wu; Xi Chen; Tong Zhu; Steven J Rothstein; Lewis N Lukens
Journal:  Plant Physiol       Date:  2013-02-06       Impact factor: 8.340

7.  Graph- and rule-based learning algorithms: a comprehensive review of their applications for cancer type classification and prognosis using genomic data.

Authors:  Saurav Mallik; Zhongming Zhao
Journal:  Brief Bioinform       Date:  2020-03-23       Impact factor: 11.622

Review 8.  A scale-free systems theory of motivation and addiction.

Authors:  R Andrew Chambers; Warren K Bickel; Marc N Potenza
Journal:  Neurosci Biobehav Rev       Date:  2007-05-03       Impact factor: 8.989

9.  Celsius: a community resource for Affymetrix microarray data.

Authors:  Allen Day; Marc R J Carlson; Jun Dong; Brian D O'Connor; Stanley F Nelson
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

10.  Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.

Authors:  Rosa María Gutiérrez-Ríos; David A Rosenblueth; José Antonio Loza; Araceli M Huerta; Jeremy D Glasner; Fred R Blattner; Julio Collado-Vides
Journal:  Genome Res       Date:  2003-11       Impact factor: 9.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.