Literature DB >> 25129073

Biocomputing based on particle disassembly.

Maxim P Nikitin1, Victoria O Shipunova2, Sergey M Deyev3, Petr I Nikitin4.   

Abstract

Nanoparticles with biocomputing capabilities could potentially be used to create sophisticated robotic devices with a variety of biomedical applications, including intelligent sensors and theranostic agents. DNA/RNA-based computing techniques have already been developed that can offer a complete set of Boolean logic functions and have been used, for example, to analyse cells and deliver molecular payloads. However, the computing potential of particle-based systems remains relatively unexplored. Here, we show that almost any type of nanoparticle or microparticle can be transformed into autonomous biocomputing structures that are capable of implementing a functionally complete set of Boolean logic gates (YES, NOT, AND and OR) and binding to a target as result of a computation. The logic-gating functionality is incorporated into self-assembled particle/biomolecule interfaces (demonstrated here with proteins) and the logic gating is achieved through input-induced disassembly of the structures. To illustrate the capabilities of the approach, we show that the structures can be used for logic-gated cell targeting and advanced immunoassays.

Mesh:

Substances:

Year:  2014        PMID: 25129073     DOI: 10.1038/nnano.2014.156

Source DB:  PubMed          Journal:  Nat Nanotechnol        ISSN: 1748-3387            Impact factor:   39.213


  32 in total

1.  Boolean logic functions of a synthetic peptide network.

Authors:  Gonen Ashkenasy; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2004-09-15       Impact factor: 15.419

Review 2.  Enzyme-based logic systems for information processing.

Authors:  Evgeny Katz; Vladimir Privman
Journal:  Chem Soc Rev       Date:  2010-03-09       Impact factor: 54.564

3.  DNA computing circuits using libraries of DNAzyme subunits.

Authors:  Johann Elbaz; Oleg Lioubashevski; Fuan Wang; Françoise Remacle; Raphael D Levine; Itamar Willner
Journal:  Nat Nanotechnol       Date:  2010-05-30       Impact factor: 39.213

4.  Training a molecular automaton to play a game.

Authors:  Renjun Pei; Elizabeth Matamoros; Manhong Liu; Darko Stefanovic; Milan N Stojanovic
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

5.  Enzyme-free nucleic acid logic circuits.

Authors:  Georg Seelig; David Soloveichik; David Yu Zhang; Erik Winfree
Journal:  Science       Date:  2006-12-08       Impact factor: 47.728

6.  Modular multi-level circuits from immobilized DNA-based logic gates.

Authors:  Brian M Frezza; Scott L Cockroft; M Reza Ghadiri
Journal:  J Am Chem Soc       Date:  2007-11-10       Impact factor: 15.419

7.  "Homogeneous" enzyme immunoassay. A new immunochemical technique.

Authors:  K E Rubenstein; R S Schneider; E F Ullman
Journal:  Biochem Biophys Res Commun       Date:  1972-05-26       Impact factor: 3.575

8.  Molecular computation of solutions to combinatorial problems.

Authors:  L M Adleman
Journal:  Science       Date:  1994-11-11       Impact factor: 47.728

Review 9.  Nanoparticle-based theranostic agents.

Authors:  Jin Xie; Seulki Lee; Xiaoyuan Chen
Journal:  Adv Drug Deliv Rev       Date:  2010-08-04       Impact factor: 15.470

10.  Autonomous molecular cascades for evaluation of cell surfaces.

Authors:  Maria Rudchenko; Steven Taylor; Payal Pallavi; Alesia Dechkovskaia; Safana Khan; Vincent P Butler; Sergei Rudchenko; Milan N Stojanovic
Journal:  Nat Nanotechnol       Date:  2013-07-28       Impact factor: 39.213

View more
  29 in total

1.  A comprehensive study of interactions between lectins and glycoproteins for the development of effective theranostic nanoagents.

Authors:  V O Shipunova; M P Nikitin; I V Zelepukin; P I Nikitin; S M Deyev; R V Petrov
Journal:  Dokl Biochem Biophys       Date:  2015-10-31       Impact factor: 0.788

2.  Transfer of molecular recognition information from DNA nanostructures to gold nanoparticles.

Authors:  Thomas G W Edwardson; Kai Lin Lau; Danny Bousmail; Christopher J Serpell; Hanadi F Sleiman
Journal:  Nat Chem       Date:  2016-01-04       Impact factor: 24.427

3.  Photoactivation of Ligands for Extrinsically and Intrinsically Triggered Disassembly of Amphiphilic Nanoassemblies.

Authors:  Jingjing Gao; Xiaochi Liu; Hatice Secinti; Ziwen Jiang; Oyuntuya Munkhbat; Yisheng Xu; Xuhong Guo; S Thayumanavan
Journal:  Chemistry       Date:  2018-01-16       Impact factor: 5.236

4.  Modulating Aptamer Specificity with pH-Responsive DNA Bonds.

Authors:  Long Li; Ying Jiang; Cheng Cui; Yu Yang; Penghui Zhang; Kimberly Stewart; Xiaoshu Pan; Xiaowei Li; Lu Yang; Liping Qiu; Weihong Tan
Journal:  J Am Chem Soc       Date:  2018-10-04       Impact factor: 15.419

5.  Synthetic Biology-Empowered Hydrogels for Medical Diagnostics.

Authors:  Hanna J Wagner; Hasti Mohsenin; Wilfried Weber
Journal:  Adv Biochem Eng Biotechnol       Date:  2021       Impact factor: 2.635

6.  Synthesis of magnetic silica nanomarkers with controlled physicochemical properties.

Authors:  I V Zelepukin; M P Nikitin; V R Cherkasov; P I Nikitin; S M Deyev; P V Petrov
Journal:  Dokl Biochem Biophys       Date:  2016-11-06       Impact factor: 0.788

7.  Synthesis of Magnetic Nanoparticles Stabilized by Magnetite-Binding Protein for Targeted Delivery to Cancer Cells.

Authors:  P A Kotelnikova; V O Shipunova; U F Aghayeva; O A Stremovskiy; M P Nikitin; I A Novikov; A A Schulga; S M Deyev; R V Petrov
Journal:  Dokl Biochem Biophys       Date:  2018-08-31       Impact factor: 0.788

8.  A Molecular Logic Gate for Developing "AND" Logic Probes and the Application in Hepatopathy Differentiation.

Authors:  Mengqi Chen; Chunhong Wang; Zexuan Ding; Hao Wang; Yu Wang; Zhibo Liu
Journal:  ACS Cent Sci       Date:  2022-06-06       Impact factor: 18.728

Review 9.  Biocomputing nanoplatforms as therapeutics and diagnostics.

Authors:  A C Evans; N N Thadani; J Suh
Journal:  J Control Release       Date:  2016-01-28       Impact factor: 9.776

Review 10.  Nonviral Locally Injected Magnetic Vectors for In Vivo Gene Delivery: A Review of Studies on Magnetofection.

Authors:  Artem A Sizikov; Marianna V Kharlamova; Maxim P Nikitin; Petr I Nikitin; Eugene L Kolychev
Journal:  Nanomaterials (Basel)       Date:  2021-04-22       Impact factor: 5.076

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.