Literature DB >> 15325653

The use of recombinant methods and molecular engineering in protein crystallization.

Zygmunt S Derewenda1.   

Abstract

Recombinant techniques are routinely used for the preparation of protein samples for structural studies including X-ray crystallography. Among other benefits, these methods allow for a vast increase in the amount of obtained protein as compared to purification from source tissues, ease of purification when fusion proteins containing affinity tags are used, introduction of SeMet for phasing, and the opportunity to modify the protein to enhance its crystallizability. Protein engineering may involve removal of flexible regions including termini and interior loops, as well as replacement of residues that affect solubility. Moreover, modification of the protein surface to induce crystal growth may include rational engineering of surface patches that can readily mediate crystal contacts. The latter approach can be used to obtain proteins of crystals recalcitrant to crystallization or to obtain well-diffracting crystals in lieu of wild-type crystals yielding data to limited resolution. This review discusses recent advances in the field and describes a number of examples of diverse protein engineering techniques used in crystallographic investigations.

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Year:  2004        PMID: 15325653     DOI: 10.1016/j.ymeth.2004.03.024

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  53 in total

1.  'Seeding' with protease to optimize protein crystallization conditions in in situ proteolysis.

Authors:  Jinguang Huang; Yanmei Gong; Dan Huang; Lesley Haire; Junfeng Liu; Youliang Peng
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2012-04-24

2.  DNA shuffling as a tool for protein crystallization.

Authors:  Robert J Keenan; Daniel L Siehl; Rebecca Gorton; Linda A Castle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-10       Impact factor: 11.205

3.  An approach to crystallizing proteins by synthetic symmetrization.

Authors:  D Rey Banatao; Duilio Cascio; Christopher S Crowley; Mark R Fleissner; Heather L Tienson; Todd O Yeates
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-18       Impact factor: 11.205

4.  Solubility engineering and crystallization of human apolipoprotein D.

Authors:  Amber Nasreen; Martin Vogt; Hyun Jin Kim; Andreas Eichinger; Arne Skerra
Journal:  Protein Sci       Date:  2005-12-01       Impact factor: 6.725

5.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

Authors:  Bin Liu; V Mitch Luna; Ying Chen; C David Stout; James A Fee
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

6.  Toward rational protein crystallization: A Web server for the design of crystallizable protein variants.

Authors:  Lukasz Goldschmidt; David R Cooper; Zygmunt S Derewenda; David Eisenberg
Journal:  Protein Sci       Date:  2007-08       Impact factor: 6.725

7.  Protein-protein interaction on lysozyme crystallization revealed by rotational diffusion analysis.

Authors:  Daisuke Takahashi; Etsuko Nishimoto; Tadashi Murase; Shoji Yamashita
Journal:  Biophys J       Date:  2008-02-29       Impact factor: 4.033

8.  Crystallization of a pentapeptide-repeat protein by reductive cyclic pentylation of free amines with glutaraldehyde.

Authors:  Matthew W Vetting; Subray S Hegde; John S Blanchard
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-04-18

Review 9.  To fuse or not to fuse: what is your purpose?

Authors:  Mark R Bell; Mark J Engleka; Asim Malik; James E Strickler
Journal:  Protein Sci       Date:  2013-09-17       Impact factor: 6.725

10.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

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