Literature DB >> 17050682

An approach to crystallizing proteins by synthetic symmetrization.

D Rey Banatao1, Duilio Cascio, Christopher S Crowley, Mark R Fleissner, Heather L Tienson, Todd O Yeates.   

Abstract

Previous studies of symmetry preferences in protein crystals suggest that symmetric proteins, such as homodimers, might crystallize more readily on average than asymmetric, monomeric proteins. Proteins that are naturally monomeric can be made homodimeric artificially by forming disulfide bonds between individual cysteine residues introduced by mutagenesis. Furthermore, by creating a variety of single-cysteine mutants, a series of distinct synthetic dimers can be generated for a given protein of interest, with each expected to gain advantage from its added symmetry and to exhibit a crystallization behavior distinct from the other constructs. This strategy was tested on phage T4 lysozyme, a protein whose crystallization as a monomer has been studied exhaustively. Experiments on three single-cysteine mutants, each prepared in dimeric form, yielded numerous novel crystal forms that cannot be realized by monomeric lysozyme. Six new crystal forms have been characterized. The results suggest that synthetic symmetrization may be a useful approach for enlarging the search space for crystallizing proteins.

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Year:  2006        PMID: 17050682      PMCID: PMC1637565          DOI: 10.1073/pnas.0607674103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  37 in total

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Journal:  Methods       Date:  2004-11       Impact factor: 3.608

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Journal:  Biochemistry       Date:  2006-06-20       Impact factor: 3.162

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Authors:  D W Heinz; B W Matthews
Journal:  Protein Eng       Date:  1994-03

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Authors:  Molly M He; Zachary A Wood; Walter A Baase; Hong Xiao; Brian W Matthews
Journal:  Protein Sci       Date:  2004-08-31       Impact factor: 6.725

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  35 in total

1.  Computational design of a protein crystal.

Authors:  Christopher J Lanci; Christopher M MacDermaid; Seung-gu Kang; Rudresh Acharya; Benjamin North; Xi Yang; X Jade Qiu; William F DeGrado; Jeffery G Saven
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-25       Impact factor: 11.205

2.  Conversion of scFv peptide-binding specificity for crystal chaperone development.

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Journal:  Protein Eng Des Sel       Date:  2011-01-08       Impact factor: 1.650

3.  A Suite of Engineered GFP Molecules for Oligomeric Scaffolding.

Authors:  David J Leibly; Mark A Arbing; Inna Pashkov; Natasha DeVore; Geoffrey S Waldo; Thomas C Terwilliger; Todd O Yeates
Journal:  Structure       Date:  2015-08-13       Impact factor: 5.006

4.  An unexpected outcome of surface engineering an integral membrane protein: improved crystallization of cytochrome ba(3) from Thermus thermophilus.

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Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-11-21

5.  'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines.

Authors:  Hidenori Yamada; Taro Tamada; Megumi Kosaka; Kohei Miyata; Shinya Fujiki; Masaru Tano; Masayuki Moriya; Mamoru Yamanishi; Eijiro Honjo; Hiroko Tada; Takeshi Ino; Hiroshi Yamaguchi; Junichiro Futami; Masaharu Seno; Takashi Nomoto; Tomoko Hirata; Motonobu Yoshimura; Ryota Kuroki
Journal:  Protein Sci       Date:  2007-07       Impact factor: 6.725

6.  Analysis of solvent content and oligomeric states in protein crystals--does symmetry matter?

Authors:  Maksymilian Chruszcz; Wojciech Potrzebowski; Matthew D Zimmerman; Marek Grabowski; Heping Zheng; Piotr Lasota; Wladek Minor
Journal:  Protein Sci       Date:  2008-04       Impact factor: 6.725

Review 7.  Lessons from the lysozyme of phage T4.

Authors:  Walter A Baase; Lijun Liu; Dale E Tronrud; Brian W Matthews
Journal:  Protein Sci       Date:  2010-04       Impact factor: 6.725

8.  Molecular basis for dimer formation of TRbeta variant D355R.

Authors:  Natalia Jouravel; Elena Sablin; Marie Togashi; John D Baxter; Paul Webb; Robert J Fletterick
Journal:  Proteins       Date:  2009-04

9.  Structural and biophysical characterization of an epitope-specific engineered Fab fragment and complexation with membrane proteins: implications for co-crystallization.

Authors:  Jennifer L Johnson; Kevin C Entzminger; Jeongmin Hyun; Sibel Kalyoncu; David P Heaner; Ivan A Morales; Aly Sheppard; James C Gumbart; Jennifer A Maynard; Raquel L Lieberman
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-03-27

10.  Understanding the physical properties that control protein crystallization by analysis of large-scale experimental data.

Authors:  W Nicholson Price; Yang Chen; Samuel K Handelman; Helen Neely; Philip Manor; Richard Karlin; Rajesh Nair; Jinfeng Liu; Michael Baran; John Everett; Saichiu N Tong; Farhad Forouhar; Swarup S Swaminathan; Thomas Acton; Rong Xiao; Joseph R Luft; Angela Lauricella; George T DeTitta; Burkhard Rost; Gaetano T Montelione; John F Hunt
Journal:  Nat Biotechnol       Date:  2009-01       Impact factor: 54.908

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