Literature DB >> 15322289

Investigation of the nature of the methionine-pi interaction in beta-hairpin peptide model systems.

Chad D Tatko1, Marcey L Waters.   

Abstract

There are frequent contacts between aromatic rings and sulfur atoms in proteins. However, it is unclear to what degree this putative interaction is stabilizing and what the nature of the interaction is. We have investigated the aryl-sulfur interaction by placing a methionine residue diagonal to an aromatic ring on the same face of a beta-hairpin, which places the methionine side chain in close proximity to the aryl side chain. The methionine (Met)-aryl interaction was compared with an equivalent hydrophobic and cation-pi interaction in the context of the beta-hairpin. The interaction between phenylalanine (Phe), tryptophan (Trp), or cyclohexylalanine (Cha) and Met stabilized the beta-hairpin by -0.3 to -0.5 kcal mole(-1), as determined by double-mutant cycles. The peptides were subjected to thermal denaturations that suggest a hydrophobic driving force for the interactions between Met and Trp or Cha. The observed interaction of Met or norleucine (Nle) with Trp or Cha are quite similar, implying a hydrophobic driving force for the Met-pi interaction. However, the thermodynamic data suggest that there may be some differences between the interaction of Met with Trp and Phe and that there may be a small thermodynamic component to the Met...Phe interaction.

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Year:  2004        PMID: 15322289      PMCID: PMC2280016          DOI: 10.1110/ps.04820104

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  16 in total

1.  Dissecting the stability of a beta-hairpin peptide that folds in water: NMR and molecular dynamics analysis of the beta-turn and beta-strand contributions to folding.

Authors:  S R Griffiths-Jones; A J Maynard; M S Searle
Journal:  J Mol Biol       Date:  1999-10-08       Impact factor: 5.469

2.  The geometry and efficacy of cation-pi interactions in a diagonal position of a designed beta-hairpin.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

3.  On the role of methionine residues in the sequence-independent recognition of nonpolar protein surfaces.

Authors:  S H Gellman
Journal:  Biochemistry       Date:  1991-07-09       Impact factor: 3.162

4.  The chemical shift index: a fast and simple method for the assignment of protein secondary structure through NMR spectroscopy.

Authors:  D S Wishart; B D Sykes; F M Richards
Journal:  Biochemistry       Date:  1992-02-18       Impact factor: 3.162

5.  Substrate diversity of herpes simplex virus thymidine kinase. Impact Of the kinematics of the enzyme.

Authors:  B D Pilger; R Perozzo; F Alber; C Wurth; G Folkers; L Scapozza
Journal:  J Biol Chem       Date:  1999-11-05       Impact factor: 5.157

6.  Non-hydrogen bond interactions involving the methionine sulfur atom.

Authors:  D Pal; P Chakrabarti
Journal:  J Biomol Struct Dyn       Date:  2001-08

7.  Evidence for a strong sulfur-aromatic interaction derived from crystallographic data.

Authors:  R J Zauhar; C L Colbert; R S Morgan; W J Welsh
Journal:  Biopolymers       Date:  2000-03       Impact factor: 2.505

8.  Selective aromatic interactions in beta-hairpin peptides.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2002-08-14       Impact factor: 15.419

9.  Side-chain interactions between sulfur-containing amino acids and phenylalanine in alpha-helices.

Authors:  A R Viguera; L Serrano
Journal:  Biochemistry       Date:  1995-07-11       Impact factor: 3.162

10.  Comparison of C-H...pi and hydrophobic interactions in a beta-hairpin peptide: impact on stability and specificity.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2004-02-25       Impact factor: 15.419

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  23 in total

1.  Insights into Thiol-Aromatic Interactions: A Stereoelectronic Basis for S-H/π Interactions.

Authors:  Christina R Forbes; Sudipta K Sinha; Himal K Ganguly; Shi Bai; Glenn P A Yap; Sandeep Patel; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2017-01-30       Impact factor: 15.419

2.  Chemical shifts provide fold populations and register of beta hairpins and beta sheets.

Authors:  R Matthew Fesinmeyer; F Michael Hudson; Katherine A Olsen; George W N White; Anna Euser; Niels H Andersen
Journal:  J Biomol NMR       Date:  2005-12       Impact factor: 2.835

3.  Quantum mechanical pairwise decomposition analysis of protein kinase B inhibitors: validating a new tool for guiding drug design.

Authors:  Xiaohua Zhang; Alan C Gibbs; Charles H Reynolds; Martin B Peters; Lance M Westerhoff
Journal:  J Chem Inf Model       Date:  2010-04-26       Impact factor: 4.956

4.  Synthesis of desthio prenylcysteine analogs: sulfur is important for biological activity.

Authors:  Brian S Henriksen; Jessica L Anderson; Christine A Hrycyna; Richard A Gibbs
Journal:  Bioorg Med Chem Lett       Date:  2005-09-23       Impact factor: 2.823

5.  Structural studies of a potent insect maturation inhibitor bound to the juvenile hormone esterase of Manduca sexta.

Authors:  Mark Wogulis; Craig E Wheelock; Shizuo G Kamita; Andrew C Hinton; Paul A Whetstone; Bruce D Hammock; David K Wilson
Journal:  Biochemistry       Date:  2006-04-04       Impact factor: 3.162

6.  Structural basis of the inhibition of Golgi alpha-mannosidase II by mannostatin A and the role of the thiomethyl moiety in ligand-protein interactions.

Authors:  Sameer P Kawatkar; Douglas A Kuntz; Robert J Woods; David R Rose; Geert-Jan Boons
Journal:  J Am Chem Soc       Date:  2006-06-28       Impact factor: 15.419

7.  Chemical Control in the Battle against Fidelity in Promiscuous Natural Product Biosynthesis: The Case of Trichodiene Synthase.

Authors:  Mudit Dixit; Michal Weitman; Jiali Gao; Dan T Major
Journal:  ACS Catal       Date:  2016-12-02       Impact factor: 13.084

8.  Conformational preferences of a 14-residue fibrillogenic peptide from acetylcholinesterase.

Authors:  Ranjit Vijayan; Philip C Biggin
Journal:  Biochemistry       Date:  2010-05-04       Impact factor: 3.162

9.  Comparative molecular field analysis using selectivity fields reveals residues in the third transmembrane helix of the serotonin transporter associated with substrate and antagonist recognition.

Authors:  Crystal C Walline; David E Nichols; F Ivy Carroll; Eric L Barker
Journal:  J Pharmacol Exp Ther       Date:  2008-03-19       Impact factor: 4.030

10.  Tryptophan 46 is a site for ethanol and ivermectin action in P2X4 receptors.

Authors:  Maya Popova; James Trudell; Kaixun Li; Ronald Alkana; Daryl Davies; Liana Asatryan
Journal:  Purinergic Signal       Date:  2013-07-02       Impact factor: 3.765

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