Literature DB >> 12167022

Selective aromatic interactions in beta-hairpin peptides.

Chad D Tatko1, Marcey L Waters.   

Abstract

To probe the selectivity possible in hydrophobic clusters, we have compared the cross-strand interactions of phenylalanine (Phe) and cyclohexylalanine (Cha) in a beta-hairpin peptide. We have found a preference for self-association among the aromatic residues, which provides 0.55 kcal/mol in stability relative to Cha-Cha cross-strand pair. NMR analysis of the Phe-Phe cross-strand pair indicates that it interacts in an edge-face interaction, despite the fact that it is highly solvent-exposed. The interaction geometry as well as the enthalpic and entropic values for the peptide containing the Phe-Phe cross-strand pair suggest that the preference for self-association arises from inherent differences in the nature of aromatic and aliphatic interactions in water.

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Year:  2002        PMID: 12167022     DOI: 10.1021/ja0262481

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  37 in total

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Journal:  J Am Chem Soc       Date:  2011-12-13       Impact factor: 15.419

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Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

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Review 4.  Implications of aromatic-aromatic interactions: From protein structures to peptide models.

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Journal:  Protein Sci       Date:  2015-10-07       Impact factor: 6.725

5.  Thermodynamic analysis of autonomous parallel beta-sheet formation in water.

Authors:  John D Fisk; Margaret A Schmitt; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2006-06-07       Impact factor: 15.419

6.  Aromatic cluster mutations produce focal modulations of β-sheet structure.

Authors:  Matthew Biancalana; Koki Makabe; Shude Yan; Shohei Koide
Journal:  Protein Sci       Date:  2015-03-25       Impact factor: 6.725

7.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

8.  A cross-strand Trp Trp pair stabilizes the hPin1 WW domain at the expense of function.

Authors:  Marcus Jäger; Maria Dendle; Amelia A Fuller; Jeffery W Kelly
Journal:  Protein Sci       Date:  2007-08-31       Impact factor: 6.725

9.  Investigation of the nature of the methionine-pi interaction in beta-hairpin peptide model systems.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2004-09       Impact factor: 6.725

10.  The external pore loop interacts with S6 and S3-S4 linker in domain 4 to assume an essential role in gating control and anticonvulsant action in the Na(+) channel.

Authors:  Ya-Chin Yang; Jui-Yi Hsieh; Chung-Chin Kuo
Journal:  J Gen Physiol       Date:  2009-08       Impact factor: 4.086

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