Literature DB >> 23353826

β-hairpin-mediated nucleation of polyglutamine amyloid formation.

Karunakar Kar1, Cody L Hoop, Kenneth W Drombosky, Matthew A Baker, Ravindra Kodali, Irene Arduini, Patrick C A van der Wel, W Seth Horne, Ronald Wetzel.   

Abstract

The conformational preferences of polyglutamine (polyQ) sequences are of major interest because of their central importance in the expanded CAG repeat diseases that include Huntington's disease. Here, we explore the response of various biophysical parameters to the introduction of β-hairpin motifs within polyQ sequences. These motifs (tryptophan zipper, disulfide, d-Pro-Gly, Coulombic attraction, l-Pro-Gly) enhance formation rates and stabilities of amyloid fibrils with degrees of effectiveness well correlated with their known abilities to enhance β-hairpin formation in other peptides. These changes led to decreases in the critical nucleus for amyloid formation from a value of n=4 for a simple, unbroken Q23 sequence to approximate unitary n values for similar length polyQs containing β-hairpin motifs. At the same time, the morphologies, secondary structures, and bioactivities of the resulting fibrils were essentially unchanged from simple polyQ aggregates. In particular, the signature pattern of solid-state NMR (13)C Gln resonances that appears to be unique to polyQ amyloid is replicated exactly in fibrils from a β-hairpin polyQ. Importantly, while β-hairpin motifs do produce enhancements in the equilibrium constant for nucleation in aggregation reactions, these Kn values remain quite low (~10(-)(10)) and there is no evidence for significant enhancement of β-structure within the monomer ensemble. The results indicate an important role for β-turns in the nucleation mechanism and structure of polyQ amyloid and have implications for the nature of the toxic species in expanded CAG repeat diseases.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23353826      PMCID: PMC3602386          DOI: 10.1016/j.jmb.2013.01.016

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  72 in total

Review 1.  Physical chemistry of polyglutamine: intriguing tales of a monotonous sequence.

Authors:  Ronald Wetzel
Journal:  J Mol Biol       Date:  2012-01-27       Impact factor: 5.469

2.  Disease-associated polyglutamine stretches in monomeric huntingtin adopt a compact structure.

Authors:  Clare Peters-Libeu; Jason Miller; Earl Rutenber; Yvonne Newhouse; Preethi Krishnan; Kenneth Cheung; Danny Hatters; Elizabeth Brooks; Kartika Widjaja; Tina Tran; Siddhartha Mitra; Montserrat Arrasate; Luis A Mosquera; Dean Taylor; Karl H Weisgraber; Steven Finkbeiner
Journal:  J Mol Biol       Date:  2012-01-28       Impact factor: 5.469

3.  Structural features and domain organization of huntingtin fibrils.

Authors:  Charles W Bugg; J Mario Isas; Torsten Fischer; Paul H Patterson; Ralf Langen
Journal:  J Biol Chem       Date:  2012-07-16       Impact factor: 5.157

4.  Identification of novel potentially toxic oligomers formed in vitro from mammalian-derived expanded huntingtin exon-1 protein.

Authors:  Leslie G Nucifora; Kathleen A Burke; Xia Feng; Nicolas Arbez; Shanshan Zhu; Jason Miller; Guocheng Yang; Tamara Ratovitski; Michael Delannoy; Paul J Muchowski; Steven Finkbeiner; Justin Legleiter; Christopher A Ross; Michelle A Poirier
Journal:  J Biol Chem       Date:  2012-03-20       Impact factor: 5.157

5.  Structural complexity of a composite amyloid fibril.

Authors:  Józef R Lewandowski; Patrick C A van der Wel; Mike Rigney; Nikolaus Grigorieff; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2011-08-23       Impact factor: 15.419

6.  The monomer-seed interaction mechanism in the formation of the β2-microglobulin amyloid fibril clarified by solution NMR techniques.

Authors:  Kotaro Yanagi; Kazumasa Sakurai; Yuichi Yoshimura; Tsuyoshi Konuma; Young-Ho Lee; Kenji Sugase; Takahisa Ikegami; Hironobu Naiki; Yuji Goto
Journal:  J Mol Biol       Date:  2012-06-06       Impact factor: 5.469

7.  Elongation kinetics of polyglutamine peptide fibrils: a quartz crystal microbalance with dissipation study.

Authors:  Robert H Walters; Kurt H Jacobson; Joel A Pedersen; Regina M Murphy
Journal:  J Mol Biol       Date:  2012-03-26       Impact factor: 5.469

8.  Slow amyloid nucleation via α-helix-rich oligomeric intermediates in short polyglutamine-containing huntingtin fragments.

Authors:  Murali Jayaraman; Ravindra Kodali; Bankanidhi Sahoo; Ashwani K Thakur; Anand Mayasundari; Rakesh Mishra; Cynthia B Peterson; Ronald Wetzel
Journal:  J Mol Biol       Date:  2011-12-09       Impact factor: 5.469

9.  Turn nucleation perturbs amyloid β self-assembly and cytotoxicity.

Authors:  Todd M Doran; Elizabeth A Anderson; Sarah E Latchney; Lisa A Opanashuk; Bradley L Nilsson
Journal:  J Mol Biol       Date:  2012-02-07       Impact factor: 5.469

10.  Identifying polyglutamine protein species in situ that best predict neurodegeneration.

Authors:  Jason Miller; Montserrat Arrasate; Elizabeth Brooks; Clare Peters Libeu; Justin Legleiter; Danny Hatters; Jessica Curtis; Kenneth Cheung; Preethi Krishnan; Siddhartha Mitra; Kartika Widjaja; Benjamin A Shaby; Gregor P Lotz; Yvonne Newhouse; Emily J Mitchell; Alex Osmand; Michelle Gray; Vanitha Thulasiramin; Frédéric Saudou; Mark Segal; X William Yang; Eliezer Masliah; Leslie M Thompson; Paul J Muchowski; Karl H Weisgraber; Steven Finkbeiner
Journal:  Nat Chem Biol       Date:  2011-10-30       Impact factor: 15.040

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  37 in total

1.  Protofilament Structure and Supramolecular Polymorphism of Aggregated Mutant Huntingtin Exon 1.

Authors:  Jennifer C Boatz; Talia Piretra; Alessia Lasorsa; Irina Matlahov; James F Conway; Patrick C A van der Wel
Journal:  J Mol Biol       Date:  2020-06-27       Impact factor: 5.469

2.  Aggregation landscapes of Huntingtin exon 1 protein fragments and the critical repeat length for the onset of Huntington's disease.

Authors:  Mingchen Chen; Peter G Wolynes
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-11       Impact factor: 11.205

Review 3.  Aggregation formation in the polyglutamine diseases: protection at a cost?

Authors:  Tiffany W Todd; Janghoo Lim
Journal:  Mol Cells       Date:  2013-06-19       Impact factor: 5.034

4.  Its preferential interactions with biopolymers account for diverse observed effects of trehalose.

Authors:  Jiang Hong; Lila M Gierasch; Zhicheng Liu
Journal:  Biophys J       Date:  2015-07-07       Impact factor: 4.033

5.  Structure and Dynamics of DNA and RNA Double Helices of CAG and GAC Trinucleotide Repeats.

Authors:  Feng Pan; Viet Hoang Man; Christopher Roland; Celeste Sagui
Journal:  Biophys J       Date:  2017-07-11       Impact factor: 4.033

6.  The Aggregation Free Energy Landscapes of Polyglutamine Repeats.

Authors:  Mingchen Chen; MinYeh Tsai; Weihua Zheng; Peter G Wolynes
Journal:  J Am Chem Soc       Date:  2016-11-10       Impact factor: 15.419

7.  Backbone Engineering within a Latent β-Hairpin Structure to Design Inhibitors of Polyglutamine Amyloid Formation.

Authors:  Karunakar Kar; Matthew A Baker; George A Lengyel; Cody L Hoop; Ravindra Kodali; In-Ja Byeon; W Seth Horne; Patrick C A van der Wel; Ronald Wetzel
Journal:  J Mol Biol       Date:  2016-12-13       Impact factor: 5.469

8.  Stable polyglutamine dimers can contain β-hairpins with interdigitated side chains-but not α-helices, β-nanotubes, β-pseudohelices, or steric zippers.

Authors:  Markus S Miettinen; Luca Monticelli; Praveen Nedumpully-Govindan; Volker Knecht; Zoya Ignatova
Journal:  Biophys J       Date:  2014-04-15       Impact factor: 4.033

9.  Architecture of polyglutamine-containing fibrils from time-resolved fluorescence decay.

Authors:  Christoph Röthlein; Markus S Miettinen; Tejas Borwankar; Jörg Bürger; Thorsten Mielke; Michael U Kumke; Zoya Ignatova
Journal:  J Biol Chem       Date:  2014-08-04       Impact factor: 5.157

10.  Structural motif of polyglutamine amyloid fibrils discerned with mixed-isotope infrared spectroscopy.

Authors:  Lauren E Buchanan; Joshua K Carr; Aaron M Fluitt; Andrew J Hoganson; Sean D Moran; Juan J de Pablo; James L Skinner; Martin T Zanni
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

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