Literature DB >> 15310952

Automation of the EMBL Hamburg protein crystallography beamline BW7B.

Ehmke Pohl1, Uwe Ristau, Thomas Gehrmann, Doris Jahn, Bernd Robrahn, Dirk Malthan, Hannes Dobler, Christoph Hermes.   

Abstract

The EMBL Hamburg Outstation currently operates five synchrotron beamlines for protein crystallography. The strongest of these beamlines is the fixed-energy beamline BW7B which receives about half of the radiation (1.5 mrad) from a 56 pole wiggler located at the DORIS III storage ring at the German synchrotron facility DESY. Over the last years this beamline has been upgraded and equipped with a fully automated crystallographic end-station and a robotic sample changer. The current set-up allows for remote operation, controlled from the user's area, of sample mounting, centering and data collection of pre-frozen crystals mounted in Hampton-type cryovials on magnetic caps. New software and intuitive graphical user interfaces have been developed that control the complete beamline set-up. Furthermore, algorithms for automatic sample centering based on UV fluorescence are being developed and combined with strategy programs in order to further automate the collection of entire diffraction data sets.

Mesh:

Substances:

Year:  2004        PMID: 15310952     DOI: 10.1107/S090904950401516X

Source DB:  PubMed          Journal:  J Synchrotron Radiat        ISSN: 0909-0495            Impact factor:   2.616


  15 in total

1.  The Structural Biology Center 19ID undulator beamline: facility specifications and protein crystallographic results.

Authors:  Gerd Rosenbaum; Randy W Alkire; Gwyndaf Evans; Frank J Rotella; Krzystof Lazarski; Rong Guang Zhang; Stephan L Ginell; Norma Duke; Istvan Naday; Jack Lazarz; Michael J Molitsky; Lisa Keefe; John Gonczy; Larry Rock; Ruslan Sanishvili; Martin A Walsh; Edwin Westbrook; Andrzej Joachimiak
Journal:  J Synchrotron Radiat       Date:  2005-12-22       Impact factor: 2.616

2.  Evaluating the efficacy of tryptophan fluorescence and absorbance as a selection tool for identifying protein crystals.

Authors:  Harindarpal S Gill
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-02-27

3.  Dynamic X-ray diffraction sampling for protein crystal positioning.

Authors:  Nicole M Scarborough; G M Dilshan P Godaliyadda; Dong Hye Ye; David J Kissick; Shijie Zhang; Justin A Newman; Michael J Sheedlo; Azhad U Chowdhury; Robert F Fischetti; Chittaranjan Das; Gregery T Buzzard; Charles A Bouman; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2017-01-01       Impact factor: 2.616

4.  Guiding synchrotron X-ray diffraction by multimodal video-rate protein crystal imaging.

Authors:  Justin A Newman; Shijie Zhang; Shane Z Sullivan; Ximeng Y Dow; Michael Becker; Michael J Sheedlo; Sergey Stepanov; Mark S Carlsen; R Michael Everly; Chittaranjan Das; Robert F Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2016-05-16       Impact factor: 2.616

Review 5.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

6.  To automate or not to automate: this is the question.

Authors:  M Cymborowski; M Klimecka; M Chruszcz; M D Zimmerman; I A Shumilin; D Borek; K Lazarski; A Joachimiak; Z Otwinowski; W Anderson; W Minor
Journal:  J Struct Funct Genomics       Date:  2010-06-06

7.  Automatic loop centring with a high-precision goniometer head at the SLS macromolecular crystallography beamlines.

Authors:  Anuschka Pauluhn; Claude Pradervand; Daniel Rossetti; Marco Salathe; Clemens Schulze-Briese
Journal:  J Synchrotron Radiat       Date:  2011-05-14       Impact factor: 2.616

8.  Remote access to crystallography beamlines at SSRL: novel tools for training, education and collaboration.

Authors:  Clyde A Smith; Graeme L Card; Aina E Cohen; Tzanko I Doukov; Thomas Eriksson; Ana M Gonzalez; Scott E McPhillips; Pete W Dunten; Irimpan I Mathews; Jinhu Song; S Michael Soltis
Journal:  J Appl Crystallogr       Date:  2010-08-03       Impact factor: 3.304

9.  Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.

Authors:  Jeremy T Madden; Scott J Toth; Christopher M Dettmar; Justin A Newman; Robert A Oglesbee; Hartmut G Hedderich; R Michael Everly; Michael Becker; Judith A Ronau; Susan K Buchanan; Vadim Cherezov; Marie E Morrow; Shenglan Xu; Dale Ferguson; Oleg Makarov; Chittaranjan Das; Robert Fischetti; Garth J Simpson
Journal:  J Synchrotron Radiat       Date:  2013-05-03       Impact factor: 2.616

10.  High-level over-expression, purification, and crystallization of a novel phospholipase C/sphingomyelinase from Pseudomonas aeruginosa.

Authors:  Daphné Truan; Adriana Vasil; Martin Stonehouse; Michael L Vasil; Ehmke Pohl
Journal:  Protein Expr Purif       Date:  2012-11-29       Impact factor: 1.650

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