Literature DB >> 15291587

Stereospecific NMR assignments of prochiral methyls, rotameric states and dynamics of valine residues in malate synthase G.

Vitali Tugarinov1, Lewis E Kay.   

Abstract

Near complete stereospecific assignments of the prochiral methyl carbons of Leu and Val residues in malate synthase G, a 723 residue enzyme, are reported. Assignments were obtained on the basis of a 10% fractional (13)C-labeling strategy developed by Wüthrich and co-workers [Neri, D; Szyperski, T; Otting, G; Senn, H; Wüthrich, K. Biochemistry 1989, 28, 7510-7516] and, in the case of Val residues, supplemented with results from a series of new methyl-TROSY quantitative J experiments for measuring (3)J(C)(gamma)(N) and (3)J(C)(gamma)(C)' couplings. The measured (3)J couplings were also used to probe Val side chain dynamics. A strong correlation is observed between rotamer averaging established on the basis of the couplings and side chain millisecond time scale dynamics measured using methyl-TROSY based (1)H-(13)C multiple quantum relaxation dispersion experiments.

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Year:  2004        PMID: 15291587     DOI: 10.1021/ja048738u

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  12 in total

1.  Is a malleable protein necessarily highly dynamic? The hydrophobic core of the nuclear coactivator binding domain is well ordered.

Authors:  Magnus Kjaergaard; Flemming M Poulsen; Kaare Teilum
Journal:  Biophys J       Date:  2012-04-03       Impact factor: 4.033

2.  Simultaneous measurement of ¹H-¹⁵N and methyl ¹Hm-¹³Cm residual dipolar couplings in large proteins.

Authors:  Xinli Liao; Raquel Godoy-Ruiz; Chenyun Guo; Vitali Tugarinov
Journal:  J Biomol NMR       Date:  2011-09-27       Impact factor: 2.835

3.  Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Vladislav Yu Orekhov; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-06       Impact factor: 11.205

4.  A simple biosynthetic method for stereospecific resonance assignment of prochiral methyl groups in proteins.

Authors:  Michael J Plevin; Olivier Hamelin; Jérôme Boisbouvier; Pierre Gans
Journal:  J Biomol NMR       Date:  2011-02-01       Impact factor: 2.835

5.  Selective editing of Val and Leu methyl groups in high molecular weight protein NMR.

Authors:  Weidong Hu; Andrew T Namanja; Steven Wong; Yuan Chen
Journal:  J Biomol NMR       Date:  2012-04-25       Impact factor: 2.835

6.  Specific labeling of threonine methyl groups for NMR studies of protein-nucleic acid complexes.

Authors:  Kaustubh Sinha; Linda Jen-Jacobson; Gordon S Rule
Journal:  Biochemistry       Date:  2011-11-03       Impact factor: 3.162

7.  Differential isotope-labeling for Leu and Val residues in a protein by E. coli cellular expression using stereo-specifically methyl labeled amino acids.

Authors:  Yohei Miyanoiri; Mitsuhiro Takeda; Kosuke Okuma; Akira M Ono; Tsutomu Terauchi; Masatsune Kainosho
Journal:  J Biomol NMR       Date:  2013-09-21       Impact factor: 2.835

8.  High-resolution methyl edited GFT NMR experiments for protein resonance assignments and structure determination.

Authors:  Garima Jaipuria; Anushikha Thakur; Patrick D'Silva; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2010-09-14       Impact factor: 2.835

9.  Accurate measurement of methyl 13C chemical shifts by solid-state NMR for the determination of protein side chain conformation: the influenza a M2 transmembrane peptide as an example.

Authors:  Mei Hong; Tatiana V Mishanina; Sarah D Cady
Journal:  J Am Chem Soc       Date:  2009-06-10       Impact factor: 15.419

10.  CH3-specific NMR assignment of alanine, isoleucine, leucine and valine methyl groups in high molecular weight proteins using a single sample.

Authors:  Rime Kerfah; Olivier Hamelin; Jérôme Boisbouvier; Dominique Marion
Journal:  J Biomol NMR       Date:  2015-11-13       Impact factor: 2.835

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