Literature DB >> 20838855

High-resolution methyl edited GFT NMR experiments for protein resonance assignments and structure determination.

Garima Jaipuria1, Anushikha Thakur, Patrick D'Silva, Hanudatta S Atreya.   

Abstract

Three-dimensional (3D) structure determination of proteins is benefitted by long-range distance constraints comprising the methyl groups, which constitute the hydrophobic core of proteins. However, in methyl groups (of Ala, Ile, Leu, Met, Thr and Val) there is a significant overlap of ¹³C and ¹H chemical shifts. Such overlap can be resolved using the recently proposed (3,2)D HCCH-COSY, a G-matrix Fourier transform (GFT) NMR based experiment, which facilitates editing of methyl groups into distinct spectral regions by combining their ¹³C chemical shifts with that of the neighboring, directly attached, ¹³C nucleus. Using this principle, we present three GFT experiments: (a) (4,3)D NOESY-HCCH, (b) (4,3)D ¹H-TOCSY-HCCH and (c) (4,3)D ¹³C-TOCSY-HCCH. These experiments provide unique 4D spectral information rapidly with high sensitivity and resolution for side-chain resonance assignments and NOE analysis of methyl groups. This is exemplified by (4,3)D NOESY-HCCH data acquired for 17.9 kDa non-deuterated cytosolic human J-protein co-chaperone, which provided crucial long-range distance constraints for its 3D structure determination.

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Year:  2010        PMID: 20838855     DOI: 10.1007/s10858-010-9444-6

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  33 in total

1.  An isotope labeling strategy for methyl TROSY spectroscopy.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  J Biomol NMR       Date:  2004-02       Impact factor: 2.835

2.  Solution NMR-derived global fold of a monomeric 82-kDa enzyme.

Authors:  Vitali Tugarinov; Wing-Yiu Choy; Vladislav Yu Orekhov; Lewis E Kay
Journal:  Proc Natl Acad Sci U S A       Date:  2005-01-06       Impact factor: 11.205

Review 3.  Methyl groups as probes of structure and dynamics in NMR studies of high-molecular-weight proteins.

Authors:  Vitali Tugarinov; Lewis E Kay
Journal:  Chembiochem       Date:  2005-09       Impact factor: 3.164

4.  Covariance NMR in higher dimensions: application to 4D NOESY spectroscopy of proteins.

Authors:  David A Snyder; Fengli Zhang; Rafael Brüschweiler
Journal:  J Biomol NMR       Date:  2007-09-18       Impact factor: 2.835

5.  Projected [(1)H, (15)N]-HMQC-[ (1)H, (1)H]-NOESY for large molecular systems: application to a 121 kDa protein-DNA complex.

Authors:  Veniamin Galius; Chrysoula Leontiou; Timothy Richmond; Gerhard Wider
Journal:  J Biomol NMR       Date:  2008-01-30       Impact factor: 2.835

6.  Fast (4,3)D GFT-TS NMR for NOESY of small to medium-sized proteins.

Authors:  Youlin Xia; Sudha Veeraraghavan; Qi Zhu; Xiaolian Gao
Journal:  J Magn Reson       Date:  2007-09-22       Impact factor: 2.229

7.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

8.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

Review 9.  The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones.

Authors:  X-B Qiu; Y-M Shao; S Miao; L Wang
Journal:  Cell Mol Life Sci       Date:  2006-11       Impact factor: 9.261

10.  A pulsed field gradient isotope-filtered 3D 13C HMQC-NOESY experiment for extracting intermolecular NOE contacts in molecular complexes.

Authors:  W Lee; M J Revington; C Arrowsmith; L E Kay
Journal:  FEBS Lett       Date:  1994-08-15       Impact factor: 4.124

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  1 in total

1.  High resolution methyl selective ¹³C-NMR of proteins in solution and solid state.

Authors:  Garima Jaipuria; Nitin Prakash Lobo; Divya Shet; Hanudatta S Atreya
Journal:  J Biomol NMR       Date:  2012-07-11       Impact factor: 2.835

  1 in total

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