Literature DB >> 15277668

Worm genomes hold the smoking guns of intron gain.

John M Logsdon1.   

Abstract

Mesh：

Year:  2004        PMID： 15277668      PMCID： PMC509182          DOI： 10.1073/pnas.0404148101

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  14 in total

Review 1.  The evolution of spliceosomal introns.

Authors:  Michael Lynch; Aaron O Richardson
Journal:  Curr Opin Genet Dev       Date:  2002-12       Impact factor: 5.578

Review 2.  Recent evidence for the exon theory of genes.

Authors:  Scott William Roy
Journal:  Genetica       Date:  2003-07       Impact factor: 1.082

Review 3.  Molecular evolution: introns fall into place.

Authors:  Arlin Stoltzfus
Journal:  Curr Biol       Date:  2004-05-04       Impact factor: 10.834

4.  The evolutionary gain of spliceosomal introns: sequence and phase preferences.

Authors:  Wei-Gang Qiu; Nick Schisler; Arlin Stoltzfus
Journal:  Mol Biol Evol       Date:  2004-03-10       Impact factor: 16.240

5.  Mystery of intron gain.

Authors:  Alexei Fedorov; Scott Roy; Larisa Fedorova; Walter Gilbert
Journal:  Genome Res       Date:  2003-09-15       Impact factor: 9.043

6.  Origins of recently gained introns in Caenorhabditis.

Authors:  Avril Coghlan; Kenneth H Wolfe
Journal:  Proc Natl Acad Sci U S A       Date:  2004-07-08       Impact factor: 11.205

7.  Large-scale comparison of intron positions in mammalian genes shows intron loss but no gain.

Authors:  Scott W Roy; Alexei Fedorov; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2003-05-30       Impact factor: 11.205

8.  Caenorhabditis phylogeny predicts convergence of hermaphroditism and extensive intron loss.

Authors:  Karin Kiontke; Nicholas P Gavin; Yevgeniy Raynes; Casey Roehrig; Fabio Piano; David H A Fitch
Journal:  Proc Natl Acad Sci U S A       Date:  2004-06-07       Impact factor: 11.205

9.  The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.

Authors:  Lincoln D Stein; Zhirong Bao; Darin Blasiar; Thomas Blumenthal; Michael R Brent; Nansheng Chen; Asif Chinwalla; Laura Clarke; Chris Clee; Avril Coghlan; Alan Coulson; Peter D'Eustachio; David H A Fitch; Lucinda A Fulton; Robert E Fulton; Sam Griffiths-Jones; Todd W Harris; LaDeana W Hillier; Ravi Kamath; Patricia E Kuwabara; Elaine R Mardis; Marco A Marra; Tracie L Miner; Patrick Minx; James C Mullikin; Robert W Plumb; Jane Rogers; Jacqueline E Schein; Marc Sohrmann; John Spieth; Jason E Stajich; C Wei; David Willey; Richard K Wilson; Richard Durbin; Robert H Waterston
Journal:  PLoS Biol       Date:  2003-11-17       Impact factor: 8.029

10.  Evidence that introns arose at proto-splice sites.

Authors:  N J Dibb; A J Newman
Journal:  EMBO J       Date:  1989-07       Impact factor: 11.598
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  13 in total

1.  Complex early genes.

Authors:  Scott W Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-02-01       Impact factor: 11.205

2.  Rates of intron loss and gain: implications for early eukaryotic evolution.

Authors:  Scott William Roy; Walter Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2005-04-12       Impact factor: 11.205

3.  Conserved intron positions in FGFR genes reflect the modular structure of FGFR and reveal stepwise addition of domains to an already complex ancestral FGFR.

Authors:  Nicole Rebscher; Christina Deichmann; Stefanie Sudhop; Jens Holger Fritzenwanker; Stephen Green; Monika Hassel
Journal:  Dev Genes Evol       Date:  2009-12-17       Impact factor: 0.900

4.  Very little intron loss/gain in Plasmodium: intron loss/gain mutation rates and intron number.

Authors:  Scott William Roy; Daniel L Hartl
Journal:  Genome Res       Date:  2006-05-15       Impact factor: 9.043

5.  Contrasting 5' and 3' evolutionary histories and frequent evolutionary convergence in Meis/hth gene structures.

Authors:  Manuel Irimia; Ignacio Maeso; Demián Burguera; Matías Hidalgo-Sánchez; Luis Puelles; Scott W Roy; Jordi Garcia-Fernàndez; José Luis Ferran
Journal:  Genome Biol Evol       Date:  2011-06-16       Impact factor: 3.416

6.  Intron gain and loss in segmentally duplicated genes in rice.

Authors:  Haining Lin; Wei Zhu; Joana C Silva; Xun Gu; C Robin Buell
Journal:  Genome Biol       Date:  2006-05-23       Impact factor: 13.583

7.  The excess of 5' introns in eukaryotic genomes.

Authors:  Kui Lin; Da-Yong Zhang
Journal:  Nucleic Acids Res       Date:  2005-11-27       Impact factor: 16.971

8.  Overlapping genes of Aedes aegypti: evolutionary implications from comparison with orthologs of Anopheles gambiae and other insects.

Authors:  Susanta K Behura; David W Severson
Journal:  BMC Evol Biol       Date:  2013-06-18       Impact factor: 3.260

9.  Origination of the split structure of spliceosomal genes from random genetic sequences.

Authors:  Rahul Regulapati; Ashwini Bhasi; Chandan Kumar Singh; Periannan Senapathy
Journal:  PLoS One       Date:  2008-10-20       Impact factor: 3.240

10.  Intron evolution: testing hypotheses of intron evolution using the phylogenomics of tetraspanins.

Authors:  Antonio Garcia-España; Roso Mares; Tung-Tien Sun; Rob Desalle
Journal:  PLoS One       Date:  2009-03-05       Impact factor: 3.240
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