Literature DB >> 15242589

Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy.

Steven J Ludtke1, Dong-Hua Chen, Jiu-Li Song, David T Chuang, Wah Chiu.   

Abstract

We present a reconstruction of native GroEL by electron cryomicroscopy (cryo-EM) and single particle analysis at 6 A resolution. alpha helices are clearly visible and beta sheet density is also visible at this resolution. While the overall conformation of this structure is quite consistent with the published X-ray data, a measurable shift in the positions of three alpha helices in the intermediate domain is observed, not consistent with any of the 7 monomeric structures in the Protein Data Bank model (1OEL). In addition, there is evidence for slight rearrangement or flexibility in parts of the apical domain. The 6 A resolution cryo-EM GroEL structure clearly demonstrates the veracity and expanding scope of cryo-EM and the single particle reconstruction technique for macromolecular machines.

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Year:  2004        PMID: 15242589     DOI: 10.1016/j.str.2004.05.006

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  64 in total

1.  EM-fold: de novo atomic-detail protein structure determination from medium-resolution density maps.

Authors:  Steffen Lindert; Nathan Alexander; Nils Wötzel; Mert Karakaş; Phoebe L Stewart; Jens Meiler
Journal:  Structure       Date:  2012-03-07       Impact factor: 5.006

2.  Fitting multimeric protein complexes into electron microscopy maps using 3D Zernike descriptors.

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Journal:  J Phys Chem B       Date:  2012-03-30       Impact factor: 2.991

3.  CryoEM structure of Hsp104 and its mechanistic implication for protein disaggregation.

Authors:  Sukyeong Lee; Bernhard Sielaff; Jungsoon Lee; Francis T F Tsai
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-19       Impact factor: 11.205

4.  Volumetric restrictions in single particle 3DEM reconstruction.

Authors:  C O S Sorzano; J A Velázquez-Muriel; R Marabini; G T Herman; J M Carazo
Journal:  Pattern Recognit       Date:  2008-02       Impact factor: 7.740

5.  Structure of Ca2+ release channel at 14 A resolution.

Authors:  Irina I Serysheva; Susan L Hamilton; Wah Chiu; Steven J Ludtke
Journal:  J Mol Biol       Date:  2005-01-21       Impact factor: 5.469

Review 6.  Bridging the imaging gap: visualizing subcellular architecture with electron tomography.

Authors:  Sriram Subramaniam
Journal:  Curr Opin Microbiol       Date:  2005-06       Impact factor: 7.934

7.  The pore structure of the closed RyR1 channel.

Authors:  Steven J Ludtke; Irina I Serysheva; Susan L Hamilton; Wah Chiu
Journal:  Structure       Date:  2005-08       Impact factor: 5.006

8.  Structure determination of clathrin coats to subnanometer resolution by single particle cryo-electron microscopy.

Authors:  Alexander Fotin; Tomas Kirchhausen; Nikolaus Grigorieff; Stephen C Harrison; Thomas Walz; Yifan Cheng
Journal:  J Struct Biol       Date:  2006-07-11       Impact factor: 2.867

9.  Automated acquisition of electron microscopic random conical tilt sets.

Authors:  Shawn Q Zheng; Justin M Kollman; Michael B Braunfeld; John W Sedat; David A Agard
Journal:  J Struct Biol       Date:  2006-11-03       Impact factor: 2.867

10.  Interpretation of electron density with stereographic roadmap projections.

Authors:  Chuan Xiao; Michael G Rossmann
Journal:  J Struct Biol       Date:  2006-10-24       Impact factor: 2.867

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