Literature DB >> 17169745

Automated acquisition of electron microscopic random conical tilt sets.

Shawn Q Zheng1, Justin M Kollman, Michael B Braunfeld, John W Sedat, David A Agard.   

Abstract

Single particle reconstruction using the random conical tilt data collection geometry is a robust method for the initial determination of macromolecular structures by electron microscopy. Unfortunately, the broad adoption of this powerful approach has been limited by the practical challenges inherent in manual data collection of the required pairs of matching high and low tilt images (typically 60 degrees and 0 degrees). The microscopist is obliged to keep the imaging area centered during tilting as well as to maintain accurate focus in the tilted image while minimizing the overall electron dose, a challenging and time consuming process. To help solve these problems, we have developed an automated system for the rapid acquisition of accurately aligned and focused tilt pairs. The system has been designed to minimize the dose incurred during alignment and focusing, making it useful in both negative stain and cryo-electron microscopy. The system includes a feature for montaging untilted images to ensure that all of the particles in the tilted image may be used in the reconstruction.

Mesh:

Year:  2006        PMID: 17169745      PMCID: PMC2556511          DOI: 10.1016/j.jsb.2006.10.026

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  16 in total

1.  Leginon: an automated system for acquisition of images from vitreous ice specimens.

Authors:  B Carragher; N Kisseberth; D Kriegman; R A Milligan; C S Potter; J Pulokas; A Reilein
Journal:  J Struct Biol       Date:  2000-10       Impact factor: 2.867

2.  Automated high-throughput electron tomography by pre-calibration of image shifts.

Authors:  U Ziese; A H Janssen; J-L Murk; W J C Geerts; T Van der Krift; A J Verkleij; A J Koster
Journal:  J Microsc       Date:  2002-02       Impact factor: 1.758

3.  The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles.

Authors:  T Ruiz; G Kopperschläger; M Radermacher
Journal:  J Struct Biol       Date:  2001-12       Impact factor: 2.867

4.  Correction of autofocusing errors due to specimen tilt for automated electron tomography.

Authors:  U Ziese; W J C Geerts; T P Van Der Krift; A J Verkleij; A J Koster
Journal:  J Microsc       Date:  2003-08       Impact factor: 1.758

5.  An improved strategy for automated electron microscopic tomography.

Authors:  Qingxiong S Zheng; Michael B Braunfeld; John W Sedat; David A Agard
Journal:  J Struct Biol       Date:  2004-08       Impact factor: 2.867

6.  Seeing GroEL at 6 A resolution by single particle electron cryomicroscopy.

Authors:  Steven J Ludtke; Dong-Hua Chen; Jiu-Li Song; David T Chuang; Wah Chiu
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

7.  The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles.

Authors:  Andres E Leschziner; Eva Nogales
Journal:  J Struct Biol       Date:  2005-12-21       Impact factor: 2.867

Review 8.  Three-dimensional reconstruction of single particles from random and nonrandom tilt series.

Authors:  M Radermacher
Journal:  J Electron Microsc Tech       Date:  1988-08

9.  A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli.

Authors:  M Radermacher; T Wagenknecht; A Verschoor; J Frank
Journal:  J Microsc       Date:  1986-01       Impact factor: 1.758

10.  Structure of the human transferrin receptor-transferrin complex.

Authors:  Yifan Cheng; Olga Zak; Philip Aisen; Stephen C Harrison; Thomas Walz
Journal:  Cell       Date:  2004-02-20       Impact factor: 41.582

View more
  8 in total

1.  The structure of the gamma-tubulin small complex: implications of its architecture and flexibility for microtubule nucleation.

Authors:  Justin M Kollman; Alex Zelter; Eric G D Muller; Bethany Fox; Luke M Rice; Trisha N Davis; David A Agard
Journal:  Mol Biol Cell       Date:  2007-10-31       Impact factor: 4.138

2.  Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation.

Authors:  Craig Yoshioka; James Pulokas; Denis Fellmann; Clinton S Potter; Ronald A Milligan; Bridget Carragher
Journal:  J Struct Biol       Date:  2007-04-20       Impact factor: 2.867

3.  Membrane Protein Complex ExbB4-ExbD1-TonB1 from Escherichia coli Demonstrates Conformational Plasticity.

Authors:  Aleksandr Sverzhinsky; Jacqueline W Chung; Justin C Deme; Lucien Fabre; Kristian T Levey; Maria Plesa; David M Carter; Patrick Lypaczewski; James W Coulton
Journal:  J Bacteriol       Date:  2015-03-23       Impact factor: 3.490

4.  Fabs enable single particle cryoEM studies of small proteins.

Authors:  Shenping Wu; Agustin Avila-Sakar; JungMin Kim; David S Booth; Charles H Greenberg; Andrea Rossi; Maofu Liao; Xueming Li; Akram Alian; Sarah L Griner; Narinobu Juge; Yadong Yu; Claudia M Mergel; Javier Chaparro-Riggers; Pavel Strop; Robert Tampé; Robert H Edwards; Robert M Stroud; Charles S Craik; Yifan Cheng
Journal:  Structure       Date:  2012-04-03       Impact factor: 5.006

Review 5.  Electron Tomography: A Three-Dimensional Analytic Tool for Hard and Soft Materials Research.

Authors:  Peter Ercius; Osama Alaidi; Matthew J Rames; Gang Ren
Journal:  Adv Mater       Date:  2015-06-18       Impact factor: 30.849

6.  Dual-axis target mapping and automated sequential acquisition of dual-axis EM tomographic data.

Authors:  Shawn Q Zheng; Atsushi Matsuda; Michael B Braunfeld; John W Sedat; David A Agard
Journal:  J Struct Biol       Date:  2009-06-21       Impact factor: 2.867

7.  Prophage-triggered membrane vesicle formation through peptidoglycan damage in Bacillus subtilis.

Authors:  Masanori Toyofuku; Gerardo Cárcamo-Oyarce; Tatsuya Yamamoto; Fabian Eisenstein; Chien-Chi Hsiao; Masaharu Kurosawa; Karl Gademann; Martin Pilhofer; Nobuhiko Nomura; Leo Eberl
Journal:  Nat Commun       Date:  2017-09-07       Impact factor: 14.919

8.  Localization and orientation of the gamma-tubulin small complex components using protein tags as labels for single particle EM.

Authors:  Rebeca M Choy; Justin M Kollman; Alex Zelter; Trisha N Davis; David A Agard
Journal:  J Struct Biol       Date:  2009-08-31       Impact factor: 2.867

  8 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.