Literature DB >> 15234268

Hydrogen tunneling in quinoproteins.

Laura Masgrau1, Jaswir Basran, Parvinder Hothi, Michael J Sutcliffe, Nigel S Scrutton.   

Abstract

It is now widely accepted that substrate C-H bond breakage by quinoprotein enzymes occurs by quantum mechanical tunneling. This paradigm shift in the conceptual framework for these reactions away from semi-classical transition state theory (i.e., including zero-point energy but with no tunneling correction) has been driven over recent years by experimental studies of the temperature dependence of kinetic isotope effects for these reactions in the TTQ-dependent enzymes methylamine dehydrogenase and aromatic amine dehydrogenase, which produced observations also inconsistent with the simple Bell correction model of tunneling. However, these data-specifically, the strong temperature dependence of reaction rates and the variable temperature dependence of kinetic isotope effects-are consistent with other tunneling models (denoted full tunneling models) in which protein and/or substrate fluctuations generate a configuration compatible with tunneling. These models accommodate substrate/protein (environment) fluctuations required to attain a configuration with degenerate quantum states and, when necessary, motion required to increase the probability of tunneling in these states. Furthermore, tunneling mechanisms in quinoproteins are supported by computational studies employing variational transition state theory with multidimensional tunneling corrections; these studies are also discussed in this review. Potential pitfalls in analyzing the temperature dependence of kinetic isotope effects as probes of tunneling are also discussed with reference to PQQ-dependent methanol dehydrogenase.

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Year:  2004        PMID: 15234268     DOI: 10.1016/j.abb.2004.03.013

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  11 in total

1.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

Review 2.  Multidimensional tunneling, recrossing, and the transmission coefficient for enzymatic reactions.

Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

3.  Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Jiali Gao; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2005-05-12       Impact factor: 2.991

4.  Quantum behavior of water protons in protein hydration shell.

Authors:  S E Pagnotta; F Bruni; R Senesi; A Pietropaolo
Journal:  Biophys J       Date:  2009-03-04       Impact factor: 4.033

5.  An analysis of reaction pathways for proton tunnelling in methylamine dehydrogenase.

Authors:  Sara Nuñez; Gary Tresadern; Ian H Hillier; Neil A Burton
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2006-08-29       Impact factor: 6.237

6.  A twin-track approach has optimized proton and hydride transfer by dynamically coupled tunneling during the evolution of protochlorophyllide oxidoreductase.

Authors:  Derren J Heyes; Colin Levy; Michiyo Sakuma; David L Robertson; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2011-02-11       Impact factor: 5.157

7.  Coupling of protein motions and hydrogen transfer during catalysis by Escherichia coli dihydrofolate reductase.

Authors:  Richard S Swanwick; Giovanni Maglia; Lai-hock Tey; Rudolf K Allemann
Journal:  Biochem J       Date:  2006-02-15       Impact factor: 3.857

8.  Promoting motions in enzyme catalysis probed by pressure studies of kinetic isotope effects.

Authors:  Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-03       Impact factor: 11.205

9.  Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

Authors:  Mou-Chi Cheng; E Neil G Marsh
Journal:  Biochemistry       Date:  2007-01-23       Impact factor: 3.162

10.  Crystallization and preliminary X-ray diffraction analysis of a flavoenzyme amine dehydrogenase/oxidase from Pyrococcus furiosus DSM 3638.

Authors:  Phillip J Monaghan; David Leys; Nigel S Scrutton
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2005-07-08
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