Literature DB >> 17202258

Promoting motions in enzyme catalysis probed by pressure studies of kinetic isotope effects.

Sam Hay1, Michael J Sutcliffe, Nigel S Scrutton.   

Abstract

Use of the pressure dependence of kinetic isotope effects, coupled with a study of their temperature dependence, as a probe for promoting motions in enzymatic hydrogen-tunneling reactions is reported. Employing morphinone reductase as our model system and by using stopped-flow methods, we measured the hydride transfer rate (a tunneling reaction) as a function of hydrostatic pressure and temperature. Increasing the pressure from 1 bar (1 bar = 100 kPa) to 2 kbar accelerates the hydride transfer reaction when both protium (from 50 to 161 s(-1) at 25 degrees C) and deuterium (12 to 31 s(-1) at 25 degrees C) are transferred. We found that the observed primary kinetic isotope effect increases with pressure (from 4.0 to 5.2 at 25 degrees C), an observation incompatible with the Bell correction model for hydrogen tunneling but consistent with a full tunneling model. By numerical modeling, we show that both the pressure and temperature dependencies of the reaction rates are consistent with the framework of the environmentally coupled tunneling model of Kuznetsov and Ulstrup [Kuznetsov AM, Ulstrup J (1999) Can J Chem 77:1085-1096], providing additional support for the role of a promoting motion in the hydride tunneling reaction in morphinone reductase. Our study demonstrates the utility of "barrier engineering" by using hydrostatic pressure as a probe for tunneling regimes in enzyme systems and provides added and independent support for the requirement of promoting motions in such tunneling reactions.

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Year:  2007        PMID: 17202258      PMCID: PMC1766415          DOI: 10.1073/pnas.0608408104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  38 in total

Review 1.  Effect of pressure on electron transfer reactions in inorganic and bioinorganic chemistry.

Authors:  Joanna Macyk; Rudi van Eldik
Journal:  Biochim Biophys Acta       Date:  2002-03-25

2.  Temperature-dependent isotope effects in soybean lipoxygenase-1: correlating hydrogen tunneling with protein dynamics.

Authors:  Michael J Knapp; Keith Rickert; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-04-17       Impact factor: 15.419

Review 3.  Environmentally coupled hydrogen tunneling. Linking catalysis to dynamics.

Authors:  Michael J Knapp; Judith P Klinman
Journal:  Eur J Biochem       Date:  2002-07

Review 4.  How enzymes work: analysis by modern rate theory and computer simulations.

Authors:  Mireia Garcia-Viloca; Jiali Gao; Martin Karplus; Donald G Truhlar
Journal:  Science       Date:  2004-01-09       Impact factor: 47.728

5.  Evidence for environmentally coupled hydrogen tunneling during dihydrofolate reductase catalysis.

Authors:  Giovanni Maglia; Rudolf K Allemann
Journal:  J Am Chem Soc       Date:  2003-11-05       Impact factor: 15.419

Review 6.  A perspective on enzyme catalysis.

Authors:  Stephen J Benkovic; Sharon Hammes-Schiffer
Journal:  Science       Date:  2003-08-29       Impact factor: 47.728

7.  H-tunneling in the multiple H-transfers of the catalytic cycle of morphinone reductase and in the reductive half-reaction of the homologous pentaerythritol tetranitrate reductase.

Authors:  Jaswir Basran; Richard J Harris; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Biol Chem       Date:  2003-08-26       Impact factor: 5.157

8.  Hydrogen tunneling in peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  Wilson A Francisco; Michael J Knapp; Ninian J Blackburn; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-07-17       Impact factor: 15.419

9.  The rate of hydrolysis of phosphomonoester dianions and the exceptional catalytic proficiencies of protein and inositol phosphatases.

Authors:  Chetan Lad; Nicholas H Williams; Richard Wolfenden
Journal:  Proc Natl Acad Sci U S A       Date:  2003-04-29       Impact factor: 11.205

10.  Alpha-secondary isotope effects as probes of "tunneling-ready" configurations in enzymatic H-tunneling: insight from environmentally coupled tunneling models.

Authors:  Christopher R Pudney; Sam Hay; Michael J Sutcliffe; Nigel S Scrutton
Journal:  J Am Chem Soc       Date:  2006-11-01       Impact factor: 15.419

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  31 in total

1.  Probing quantum and dynamic effects in concerted proton-electron transfer reactions of phenol-base compounds.

Authors:  Todd F Markle; Adam L Tenderholt; James M Mayer
Journal:  J Phys Chem B       Date:  2011-12-23       Impact factor: 2.991

2.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

3.  Good vibrations in enzyme-catalysed reactions.

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

4.  Barrier compression and its contribution to both classical and quantum mechanical aspects of enzyme catalysis.

Authors:  Sam Hay; Linus O Johannissen; Michael J Sutcliffe; Nigel S Scrutton
Journal:  Biophys J       Date:  2010-01-06       Impact factor: 4.033

5.  Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-03       Impact factor: 11.205

Review 6.  H-transfers in Photosystem II: what can we learn from recent lessons in the enzyme community?

Authors:  Sam Hay; Nigel S Scrutton
Journal:  Photosynth Res       Date:  2008-09-03       Impact factor: 3.573

7.  The enzyme aromatic amine dehydrogenase induces a substrate conformation crucial for promoting vibration that significantly reduces the effective potential energy barrier to proton transfer.

Authors:  Linus O Johannissen; Nigel S Scrutton; Michael J Sutcliffe
Journal:  J R Soc Interface       Date:  2008-12-06       Impact factor: 4.118

8.  Coupling of pressure-induced structural shifts to spectral changes in a yellow fluorescent protein.

Authors:  Buz Barstow; Nozomi Ando; Chae Un Kim; Sol M Gruner
Journal:  Biophys J       Date:  2009-09-16       Impact factor: 4.033

9.  "Eppur si muove" (Yet it moves).

Authors:  Vicent Moliner
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-01       Impact factor: 11.205

Review 10.  Relationship of femtosecond-picosecond dynamics to enzyme-catalyzed H-transfer.

Authors:  Christopher M Cheatum; Amnon Kohen
Journal:  Top Curr Chem       Date:  2013
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