Literature DB >> 18247350

NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors.

Kiran Kumar Singarapu1, Rong Xiao, Thomas Acton, Burkhard Rost, Gaetano T Montelione, Thomas Szyperski.   

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Year:  2008        PMID： 18247350      PMCID： PMC5596925          DOI： 10.1002/prot.21947

Source DB:  PubMed          Journal:  Proteins        ISSN： 0887-3585


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  26 in total

1.  Exploring steric constraints on protein mutations using MAGE/PROBE.

Authors:  J M Word; R C Bateman; B K Presley; S C Lovell; D C Richardson
Journal:  Protein Sci       Date:  2000-11       Impact factor: 6.725

2.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

3.  MOLMOL: a program for display and analysis of macromolecular structures.

Authors:  R Koradi; M Billeter; K Wüthrich
Journal:  J Mol Graph       Date:  1996-02

4.  Automated analysis of protein NMR assignments using methods from artificial intelligence.

Authors:  D E Zimmerman; C A Kulikowski; Y Huang; W Feng; M Tashiro; S Shimotakahara; C Chien; R Powers; G T Montelione
Journal:  J Mol Biol       Date:  1997-06-20       Impact factor: 5.469

5.  The program XEASY for computer-supported NMR spectral analysis of biological macromolecules.

Authors:  C Bartels; T H Xia; M Billeter; P Güntert; K Wüthrich
Journal:  J Biomol NMR       Date:  1995-07       Impact factor: 2.835

6.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

7.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

8.  Torsion angle dynamics for NMR structure calculation with the new program DYANA.

Authors:  P Güntert; C Mumenthaler; K Wüthrich
Journal:  J Mol Biol       Date:  1997-10-17       Impact factor: 5.469

9.  Stereospecific nuclear magnetic resonance assignments of the methyl groups of valine and leucine in the DNA-binding domain of the 434 repressor by biosynthetically directed fractional 13C labeling.

Authors:  D Neri; T Szyperski; G Otting; H Senn; K Wüthrich
Journal:  Biochemistry       Date:  1989-09-19       Impact factor: 3.162

10.  Crystal structures of the ribosome in complex with release factors RF1 and RF2 bound to a cognate stop codon.

Authors:  Sabine Petry; Ditlev E Brodersen; Frank V Murphy; Christine M Dunham; Maria Selmer; Michael J Tarry; Ann C Kelley; V Ramakrishnan
Journal:  Cell       Date:  2005-12-29       Impact factor: 41.582
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  3 in total

1.  YaeJ is a novel ribosome-associated protein in Escherichia coli that can hydrolyze peptidyl-tRNA on stalled ribosomes.

Authors:  Yoshihiro Handa; Noriyuki Inaho; Nobukazu Nameki
Journal:  Nucleic Acids Res       Date:  2010-11-03       Impact factor: 16.971

Review 2.  Ribosome Rescue Pathways in Bacteria.

Authors:  Claudia Müller; Caillan Crowe-McAuliffe; Daniel N Wilson
Journal:  Front Microbiol       Date:  2021-03-18       Impact factor: 5.640

3.  Identification of residues required for stalled-ribosome rescue in the codon-independent release factor YaeJ.

Authors:  Hiroyuki Kogure; Yoshihiro Handa; Masahiro Nagata; Naoto Kanai; Peter Güntert; Kenji Kubota; Nobukazu Nameki
Journal:  Nucleic Acids Res       Date:  2013-12-09       Impact factor: 16.971
  3 in total

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