Literature DB >> 19618276

Chemical exchange effects during refocusing pulses in constant-time CPMG relaxation dispersion experiments.

Wazo Myint1, Rieko Ishima.   

Abstract

In the analysis of the constant-time Carr-Purcell-Meiboom-Gill (CT-CPMG) relaxation dispersion experiment, chemical exchange parameters, such as rate of exchange and population of the exchanging species, are typically optimized using equations that predict experimental relaxation rates recorded as a function of effective field strength. In this process, the effect of chemical exchange during the CPMG pulses is typically assumed to be the same as during the free-precession. This approximation may introduce systematic errors into the analysis of data because the number of CPMG pulses is incremented during the constant-time relaxation period, and the total pulse duration therefore varies as a function of the effective field strength. In order to estimate the size of such errors, we simulate the time-dependence of magnetization during the entire constant time period, explicitly taking into account the effect of the CPMG pulses on the spin relaxation rate. We show that in general the difference in the relaxation dispersion profile calculated using a practical pulse width from that calculated using an extremely short pulse width is small, but under certain circumstances can exceed 1 s(-1). The difference increases significantly when CPMG pulses are miscalibrated.

Mesh:

Substances:

Year:  2009        PMID: 19618276     DOI: 10.1007/s10858-009-9344-9

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  25 in total

1.  Slow internal dynamics in proteins: application of NMR relaxation dispersion spectroscopy to methyl groups in a cavity mutant of T4 lysozyme.

Authors:  Frans A A Mulder; Bin Hon; Anthony Mittermaier; Frederick W Dahlquist; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2002-02-20       Impact factor: 15.419

2.  Determination of the rotational diffusion tensor of macromolecules in solution from nmr relaxation data with a combination of exact and approximate methods--application to the determination of interdomain orientation in multidomain proteins.

Authors:  R Ghose; D Fushman; D Cowburn
Journal:  J Magn Reson       Date:  2001-04       Impact factor: 2.229

3.  Probing the kinetic landscape of transient peptide-protein interactions by use of peptide (15)n NMR relaxation dispersion spectroscopy: binding of an antithrombin peptide to human prothrombin.

Authors:  Dmitri Tolkatchev; Ping Xu; Feng Ni
Journal:  J Am Chem Soc       Date:  2003-10-15       Impact factor: 15.419

4.  A phase cycle scheme that significantly suppresses offset-dependent artifacts in the R2-CPMG 15N relaxation experiment.

Authors:  Grover N B Yip; Erik R P Zuiderweg
Journal:  J Magn Reson       Date:  2004-11       Impact factor: 2.229

5.  Conservation of mus-ms enzyme motions in the apo- and substrate-mimicked state.

Authors:  Heather Beach; Roger Cole; Michelle L Gill; J Patrick Loria
Journal:  J Am Chem Soc       Date:  2005-06-29       Impact factor: 15.419

6.  CPMG sequences with enhanced sensitivity to chemical exchange.

Authors:  C Wang; M J Grey; A G Palmer
Journal:  J Biomol NMR       Date:  2001-12       Impact factor: 2.835

7.  Microsecond-to-millisecond conformational dynamics demarcate the GluR2 glutamate receptor bound to agonists glutamate, quisqualate, and AMPA.

Authors:  Elizabeth R Valentine; Arthur G Palmer
Journal:  Biochemistry       Date:  2005-03-08       Impact factor: 3.162

8.  Structure and dynamics of pin1 during catalysis by NMR.

Authors:  Wladimir Labeikovsky; Elan Z Eisenmesser; Daryl A Bosco; Dorothee Kern
Journal:  J Mol Biol       Date:  2007-01-24       Impact factor: 5.469

Review 9.  Characterization of enzyme motions by solution NMR relaxation dispersion.

Authors:  J Patrick Loria; Rebecca B Berlow; Eric D Watt
Journal:  Acc Chem Res       Date:  2008-02-19       Impact factor: 22.384

10.  An exchange-free measure of 15N transverse relaxation: an NMR spectroscopy application to the study of a folding intermediate with pervasive chemical exchange.

Authors:  D Flemming Hansen; Daiwen Yang; Haniqiao Feng; Zheng Zhou; Silke Wiesner; Yawen Bai; Lewis E Kay
Journal:  J Am Chem Soc       Date:  2007-08-28       Impact factor: 15.419

View more
  14 in total

1.  GUARDD: user-friendly MATLAB software for rigorous analysis of CPMG RD NMR data.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  J Biomol NMR       Date:  2011-12-11       Impact factor: 2.835

2.  Enhanced accuracy of kinetic information from CT-CPMG experiments by transverse rotating-frame spectroscopy.

Authors:  David Ban; Adam Mazur; Marta G Carneiro; T Michael Sabo; Karin Giller; Leonardus M I Koharudin; Stefan Becker; Angela M Gronenborn; Christian Griesinger; Donghan Lee
Journal:  J Biomol NMR       Date:  2013-08-15       Impact factor: 2.835

3.  Characterization of D-maltose as a T2 -exchange contrast agent for dynamic contrast-enhanced MRI.

Authors:  Joshua M Goldenberg; Mark D Pagel; Julio Cárdenas-Rodríguez
Journal:  Magn Reson Med       Date:  2018-01-25       Impact factor: 4.668

4.  Analysis of mcDESPOT- and CPMG-derived parameter estimates for two-component nonexchanging systems.

Authors:  Mustapha Bouhrara; David A Reiter; Hasan Celik; Kenneth W Fishbein; Richard Kijowski; Richard G Spencer
Journal:  Magn Reson Med       Date:  2015-07-03       Impact factor: 4.668

5.  Quantitative comparison of errors in 15N transverse relaxation rates measured using various CPMG phasing schemes.

Authors:  Wazo Myint; Yufeng Cai; Celia A Schiffer; Rieko Ishima
Journal:  J Biomol NMR       Date:  2012-04-01       Impact factor: 2.835

6.  Rapid simultaneous high-resolution mapping of myelin water fraction and relaxation times in human brain using BMC-mcDESPOT.

Authors:  Mustapha Bouhrara; Richard G Spencer
Journal:  Neuroimage       Date:  2016-10-08       Impact factor: 6.556

7.  Insights into human cerebral white matter maturation and degeneration across the adult lifespan.

Authors:  Matthew Kiely; Curtis Triebswetter; Luis E Cortina; Zhaoyuan Gong; Maryam H Alsameen; Richard G Spencer; Mustapha Bouhrara
Journal:  Neuroimage       Date:  2021-11-20       Impact factor: 6.556

8.  Evaluating the uncertainty in exchange parameters determined from off-resonance R1ρ relaxation dispersion for systems in fast exchange.

Authors:  Jameson R Bothe; Zachary W Stein; Hashim M Al-Hashimi
Journal:  J Magn Reson       Date:  2014-04-20       Impact factor: 2.229

9.  Probing microsecond time scale dynamics in proteins by methyl (1)H Carr-Purcell-Meiboom-Gill relaxation dispersion NMR measurements. Application to activation of the signaling protein NtrC(r).

Authors:  Renee Otten; Janice Villali; Dorothee Kern; Frans A A Mulder
Journal:  J Am Chem Soc       Date:  2010-11-08       Impact factor: 15.419

10.  Use of the NESMA Filter to Improve Myelin Water Fraction Mapping with Brain MRI.

Authors:  Mustapha Bouhrara; David A Reiter; Michael C Maring; Jean-Marie Bonny; Richard G Spencer
Journal:  J Neuroimaging       Date:  2018-07-12       Impact factor: 2.486

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.