Literature DB >> 15174883

Methyl groups as probes for proteins and complexes in in-cell NMR experiments.

Zach Serber1, Wesley Straub, Lorenzo Corsini, Anson M Nomura, Nobuhisa Shimba, Charles S Craik, Paul Ortiz de Montellano, Volker Dötsch.   

Abstract

Studying protein components of large intracellular complexes by in-cell NMR has so far been impossible because the backbone resonances are unobservable due to their slow tumbling rates. We describe a methodology that overcomes this difficulty through selective labeling of methyl groups, which possess more favorable relaxation behavior. Comparison of different in-cell labeling schemes with three different proteins, calmodulin, NmerA, and FKBP, shows that selective labeling with [(13)C]methyl groups on methionine and alanine provides excellent sensitivity with low background levels at very low costs.

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Year:  2004        PMID: 15174883     DOI: 10.1021/ja049977k

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  NMR protein structure determination in living E. coli cells using nonlinear sampling.

Authors:  Teppei Ikeya; Atsuko Sasaki; Daisuke Sakakibara; Yoshiki Shigemitsu; Junpei Hamatsu; Tomomi Hanashima; Masaki Mishima; Masatoshi Yoshimasu; Nobuhiro Hayashi; Tsutomu Mikawa; Daniel Nietlispach; Markus Wälchli; Brian O Smith; Masahiro Shirakawa; Peter Güntert; Yutaka Ito
Journal:  Nat Protoc       Date:  2010-05-13       Impact factor: 13.491

2.  Suppression of phospholipid biosynthesis by cerulenin in the condensed Single-Protein-Production (cSPP) system.

Authors:  Lili Mao; Koichi Inoue; Yisong Tao; Gaetano T Montelione; Ann E McDermott; Masayori Inouye
Journal:  J Biomol NMR       Date:  2011-01-30       Impact factor: 2.835

Review 3.  A Unique Tool for Cellular Structural Biology: In-cell NMR.

Authors:  Enrico Luchinat; Lucia Banci
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

4.  A new carbamidemethyl-linked lanthanoid chelating tag for PCS NMR spectroscopy of proteins in living HeLa cells.

Authors:  Yuya Hikone; Go Hirai; Masaki Mishima; Kohsuke Inomata; Teppei Ikeya; Souichiro Arai; Masahiro Shirakawa; Mikiko Sodeoka; Yutaka Ito
Journal:  J Biomol NMR       Date:  2016-09-08       Impact factor: 2.835

Review 5.  Site-specific labeling of proteins with NMR-active unnatural amino acids.

Authors:  David H Jones; Susan E Cellitti; Xueshi Hao; Qiong Zhang; Michael Jahnz; Daniel Summerer; Peter G Schultz; Tetsuo Uno; Bernhard H Geierstanger
Journal:  J Biomol NMR       Date:  2009-08-09       Impact factor: 2.835

6.  Quantitative NMR analysis of the protein G B1 domain in Xenopus laevis egg extracts and intact oocytes.

Authors:  Philipp Selenko; Zach Serber; Bedrick Gadea; Joan Ruderman; Gerhard Wagner
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-27       Impact factor: 11.205

7.  Specific ion effects on macromolecular interactions in Escherichia coli extracts.

Authors:  Ciara Kyne; Brian Ruhle; Virginie W Gautier; Peter B Crowley
Journal:  Protein Sci       Date:  2014-12-30       Impact factor: 6.725

8.  Improved sensitivity and resolution of in-cell NMR spectra.

Authors:  David S Burz; Leonard Breindel; Alexander Shekhtman
Journal:  Methods Enzymol       Date:  2019-03-13       Impact factor: 1.600

Review 9.  In-Cell NMR Spectroscopy of Intrinsically Disordered Proteins.

Authors:  Nicholas Sciolino; David S Burz; Alexander Shekhtman
Journal:  Proteomics       Date:  2019-01-15       Impact factor: 3.984

10.  Protein (19)F NMR in Escherichia coli.

Authors:  Conggang Li; Gui-Fang Wang; Yaqiang Wang; Rachel Creager-Allen; Evan A Lutz; Heidi Scronce; Kristin M Slade; Rebecca A S Ruf; Ryan A Mehl; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2010-01-13       Impact factor: 15.419

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