Literature DB >> 15149217

Comparison of enzymatic and non-enzymatic nitroethane anion formation: thermodynamics and contribution of tunneling.

Michael P Valley1, Paul F Fitzpatrick.   

Abstract

In the reaction of nitroalkane oxidase (NAO), the oxidation of nitroalkanes to the corresponding aldehydes or ketones is initiated by the deprotonation of the neutral nitroalkane. The energetics of nitroethane ionization for both the enzymatic and non-enzymatic reactions have been determined by measuring rate constants as a function of temperature. At 25 degrees C, the rate constant for the acetate-catalyzed reaction is a billionfold smaller than the kcat/Km value for NAO. This corresponds to a difference of 12.3 kcal/mol in the free energy of activation that is largely due to a difference in the activation enthalpy. Analysis of the temperature dependence of the deuterium kinetic isotope effects on the reactions yields similar DeltaEa and AH/AD values for the acetate, phosphate, and NAO-catalyzed reactions that fall within the semiclassical limits, consistent with similar contributions of tunneling to the enzymatic and non-enzymatic reactions.

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Year:  2004        PMID: 15149217      PMCID: PMC1780276          DOI: 10.1021/ja0484606

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  19 in total

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Authors:  Michael J Sutcliffe; Nigel S Scrutton
Journal:  Eur J Biochem       Date:  2002-07

2.  Identification of the naturally occurring flavin of nitroalkane oxidase from fusarium oxysporum as a 5-nitrobutyl-FAD and conversion of the enzyme to the active FAD-containing form.

Authors:  G Gadda; R D Edmondson; D H Russell; P F Fitzpatrick
Journal:  J Biol Chem       Date:  1997-02-28       Impact factor: 5.157

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Authors:  G Gadda; P F Fitzpatrick
Journal:  Biochemistry       Date:  1998-04-28       Impact factor: 3.162

4.  Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

5.  A proficient enzyme.

Authors:  A Radzicka; R Wolfenden
Journal:  Science       Date:  1995-01-06       Impact factor: 47.728

6.  Use of pH and kinetic isotope effects to dissect the effects of substrate size on binding and catalysis by nitroalkane oxidase.

Authors:  G Gadda; D Y Choe; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2000-10-01       Impact factor: 4.013

7.  Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily.

Authors:  S Colette Daubner; Giovanni Gadda; Michael P Valley; Paul F Fitzpatrick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

8.  Substrate specificity of a nitroalkane-oxidizing enzyme.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  1999-03-15       Impact factor: 4.013

9.  Hydrogen tunneling in peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  Wilson A Francisco; Michael J Knapp; Ninian J Blackburn; Judith P Klinman
Journal:  J Am Chem Soc       Date:  2002-07-17       Impact factor: 15.419

10.  Reductive half-reaction of nitroalkane oxidase: effect of mutation of the active site aspartate to glutamate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

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  13 in total

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Authors:  Jingzhi Pu; Jiali Gao; Donald G Truhlar
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

2.  Small temperature dependence of the kinetic isotope effect for the hydride transfer reaction catalyzed by Escherichia coli dihydrofolate reductase.

Authors:  Jingzhi Pu; Shuhua Ma; Jiali Gao; Donald G Truhlar
Journal:  J Phys Chem B       Date:  2005-05-12       Impact factor: 2.991

3.  Combined QM/MM and path integral simulations of kinetic isotope effects in the proton transfer reaction between nitroethane and acetate ion in water.

Authors:  Jiali Gao; Kin-Yiu Wong; Dan T Major
Journal:  J Comput Chem       Date:  2008-03       Impact factor: 3.376

4.  Differential quantum tunneling contributions in nitroalkane oxidase catalyzed and the uncatalyzed proton transfer reaction.

Authors:  Dan T Major; Annie Heroux; Allen M Orville; Michael P Valley; Paul F Fitzpatrick; Jiali Gao
Journal:  Proc Natl Acad Sci U S A       Date:  2009-11-19       Impact factor: 11.205

Review 5.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

6.  Enzymatic Kinetic Isotope Effects from Path-Integral Free Energy Perturbation Theory.

Authors:  J Gao
Journal:  Methods Enzymol       Date:  2016-07-22       Impact factor: 1.600

7.  Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

Authors:  José R Tormos; Alexander B Taylor; S Colette Daubner; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

8.  Mechanistic and structural analyses of the roles of Arg409 and Asp402 in the reaction of the flavoprotein nitroalkane oxidase.

Authors:  Paul F Fitzpatrick; Dragana M Bozinovski; Annie Héroux; Patrick G Shaw; Michael P Valley; Allen M Orville
Journal:  Biochemistry       Date:  2007-11-10       Impact factor: 3.162

9.  Characterization of active site residues of nitroalkane oxidase.

Authors:  Michael P Valley; Nana S Fenny; Shah R Ali; Paul F Fitzpatrick
Journal:  Bioorg Chem       Date:  2009-12-28       Impact factor: 5.275

Review 10.  Fundamental challenges in mechanistic enzymology: progress toward understanding the rate enhancements of enzymes.

Authors:  Daniel Herschlag; Aditya Natarajan
Journal:  Biochemistry       Date:  2013-03-14       Impact factor: 3.162

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