Literature DB >> 20481475

Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

José R Tormos1, Alexander B Taylor, S Colette Daubner, P John Hart, Paul F Fitzpatrick.   

Abstract

The flavoprotein nitroalkane oxidase (NAO) from Fusarium oxysporum catalyzes the oxidation of primary and secondary nitroalkanes to their respective aldehydes and ketones. Structurally, the enzyme is a member of the acyl-CoA dehydrogenase superfamily. To date no enzymes other than that from F. oxysporum have been annotated as NAOs. To identify additional potential NAOs, the available database was searched for enzymes in which the active site residues Asp402, Arg409, and Ser276 were conserved. Of the several fungal enzymes identified in this fashion, PODANSg2158 from Podospora anserina was selected for expression and characterization. The recombinant enzyme is a flavoprotein with activity on nitroalkanes comparable to the F. oxysporum NAO, although the substrate specificity is somewhat different. Asp399, Arg406, and Ser273 in PODANSg2158 correspond to the active site triad in F. oxysporum NAO. The k(cat)/K(M)-pH profile with nitroethane shows a pK(a) of 5.9 that is assigned to Asp399 as the active site base. Mutation of Asp399 to asparagine decreases the k(cat)/K(M) value for nitroethane over 2 orders of magnitude. The R406K and S373A mutations decrease this kinetic parameter by 64- and 3-fold, respectively. The structure of PODANSg2158 has been determined at a resolution of 2.0 A, confirming its identification as an NAO.

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Year:  2010        PMID: 20481475      PMCID: PMC2889615          DOI: 10.1021/bi100610e

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  34 in total

1.  Monomeric sarcosine oxidase: role of histidine 269 in catalysis.

Authors:  Gouhua Zhao; Hui Song; Zhi-Wei Chen; F Scott Mathews; Marilyn Schuman Jorns
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

2.  Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Biochemistry       Date:  2000-02-15       Impact factor: 3.162

3.  Use of pH and kinetic isotope effects to dissect the effects of substrate size on binding and catalysis by nitroalkane oxidase.

Authors:  G Gadda; D Y Choe; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2000-10-01       Impact factor: 4.013

4.  High-level expression of human liver monoamine oxidase B in Pichia pastoris.

Authors:  P Newton-Vinson; F Hubalek; D E Edmondson
Journal:  Protein Expr Purif       Date:  2000-11       Impact factor: 1.650

5.  Cloning of nitroalkane oxidase from Fusarium oxysporum identifies a new member of the acyl-CoA dehydrogenase superfamily.

Authors:  S Colette Daubner; Giovanni Gadda; Michael P Valley; Paul F Fitzpatrick
Journal:  Proc Natl Acad Sci U S A       Date:  2002-02-26       Impact factor: 11.205

6.  Substrate specificity of a nitroalkane-oxidizing enzyme.

Authors:  G Gadda; P F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  1999-03-15       Impact factor: 4.013

7.  Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

Review 8.  Acyl-CoA dehydrogenases. A mechanistic overview.

Authors:  Sandro Ghisla; Colin Thorpe
Journal:  Eur J Biochem       Date:  2004-02

Review 9.  Acyl-CoA dehydrogenases and acyl-CoA oxidases. Structural basis for mechanistic similarities and differences.

Authors:  Jung-Ja P Kim; Retsu Miura
Journal:  Eur J Biochem       Date:  2004-02

10.  Reductive half-reaction of nitroalkane oxidase: effect of mutation of the active site aspartate to glutamate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

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  3 in total

1.  Expression, purification and preliminary X-ray crystallographic analysis of nitroalkane oxidase (NAO) from Pseudomonas aeruginosa.

Authors:  Jeong Hye Lee; Ae Kyung Park; Jae Soon Oh; Ki Seog Lee; Young Min Chi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-07-27

Review 2.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

3.  Solvent isotope and viscosity effects on the steady-state kinetics of the flavoprotein nitroalkane oxidase.

Authors:  Giovanni Gadda; Paul F Fitzpatrick
Journal:  FEBS Lett       Date:  2013-05-06       Impact factor: 4.124

  3 in total

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