Literature DB >> 10684621

Mechanism of nitroalkane oxidase: 2. pH and kinetic isotope effects.

G Gadda1, P F Fitzpatrick.   

Abstract

Nitroalkane oxidase catalyzes the oxidation of nitroalkanes to aldehydes or ketones with production of nitrite and hydrogen peroxide. pH and kinetic isotope effects with [1, 1-(2)H(2)]nitroethane have been used to study the mechanism of this enzyme. The V/K(ne) pH profile is bell-shaped. A group with a pK(a) value of about 7 must be unprotonated and one with a pK(a) value of 9.5 must be protonated for catalysis. The lower pK(a) value is seen also in the pK(is) profile for the competitive inhibitor valerate, indicating that nitroethane has no significant external commitments to catalysis. The (D)(V/K)(ne) value is pH-independent with a value of 7.5, whereas the (D)V(max) value increases from 1.4 at pH 8.2 to a limiting value of 7.4 below pH 5. The V(max) pH profile decreases at low and high pH, with pK(a) values of 6.6 and 9.5, respectively. Imidazole, which activates the enzyme, affects the V(max) but not the V/K(ne) pH profile. In the presence of imidazole at pH 7 the (D)V(max) value increases to a value close to the intrinsic value, consistent with cleavage of the carbon-hydrogen bond of the substrate being fully rate-limiting for catalysis in the presence of imidazole.

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Year:  2000        PMID: 10684621     DOI: 10.1021/bi992255z

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  Crystal structures of nitroalkane oxidase: insights into the reaction mechanism from a covalent complex of the flavoenzyme trapped during turnover.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Biochemistry       Date:  2006-01-31       Impact factor: 3.162

2.  Establishing the kinetic competency of the cationic imine intermediate in nitroalkane oxidase.

Authors:  Michael P Valley; Shane E Tichy; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2005-02-23       Impact factor: 15.419

Review 3.  Nitroalkane oxidase: Structure and mechanism.

Authors:  Paul F Fitzpatrick
Journal:  Arch Biochem Biophys       Date:  2017-05-18       Impact factor: 4.013

4.  Identification of a hypothetical protein from Podospora anserina as a nitroalkane oxidase.

Authors:  José R Tormos; Alexander B Taylor; S Colette Daubner; P John Hart; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2010-06-22       Impact factor: 3.162

5.  Inactivation of nitroalkane oxidase upon mutation of the active site base and rescue with a deprotonated substrate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2003-07-23       Impact factor: 15.419

6.  Crystallization and preliminary analysis of active nitroalkane oxidase in three crystal forms.

Authors:  Akanksha Nagpal; Michael P Valley; Paul F Fitzpatrick; Allen M Orville
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-07-21

7.  Comparison of enzymatic and non-enzymatic nitroethane anion formation: thermodynamics and contribution of tunneling.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  J Am Chem Soc       Date:  2004-05-26       Impact factor: 15.419

8.  Reductive half-reaction of nitroalkane oxidase: effect of mutation of the active site aspartate to glutamate.

Authors:  Michael P Valley; Paul F Fitzpatrick
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

9.  Involvement of ionizable groups in catalysis of human liver glycolate oxidase.

Authors:  Andrea Pennati; Giovanni Gadda
Journal:  J Biol Chem       Date:  2009-09-16       Impact factor: 5.157

10.  Solvent isotope and viscosity effects on the steady-state kinetics of the flavoprotein nitroalkane oxidase.

Authors:  Giovanni Gadda; Paul F Fitzpatrick
Journal:  FEBS Lett       Date:  2013-05-06       Impact factor: 4.124

  10 in total

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