Literature DB >> 15136155

Microsecond freeze-hyperquenching: development of a new ultrafast micro-mixing and sampling technology and application to enzyme catalysis.

Alexey V Cherepanov1, Simon De Vries.   

Abstract

A novel freeze-quench instrument with a characteristic <<dead-time>> of 137 +/- 18 micros is reported. The prototype has several key features that distinguish it from conventional freeze-quench devices and provide a significant improvement in time resolution: (a) high operating pressures (up to 400 bar) result in a sample flow with high linear rates (up to 200 m s(-1)); (b) tangential micro-mixer with an operating volume of approximately 1 nl yields short mixing times (up to 20 micros); (c) fast transport between the mixer and the cryomedium results in short reaction times: the ageing solution exits the mixer as a free-flowing jet, and the chemical reaction occurs "in-flight" on the way to the cryomedium; (d) a small jet diameter (approximately 20 microm) and a high jet velocity (approximately 200 m s(-1)) provide high sample-cooling rates, resulting in a short cryofixation time (up to 30 micros). The dynamic range of the freeze-quench device is between 130 micros and 15 ms. The novel tangential micro-mixer efficiently mixes viscous aqueous solutions, showing more than 95% mixing at eta < or = 4 (equivalent to protein concentrations up to 250 mg ml(-1)), which makes it an excellent tool for the preparation of pre-steady state samples of concentrated protein solutions for spectroscopic structure analysis. The novel freeze-quench device is characterized using the reaction of binding of azide to metmyoglobin from horse heart. Reaction samples are analyzed using 77 K optical absorbance spectroscopy, and X-band EPR spectroscopy. A simple procedure of spectral analysis is reported that allows (a) to perform a quantitative analysis of the reaction kinetics and (b) to identify and characterize novel reaction intermediates. The reduction of dioxygen by the bo3-type quinol oxidase from Escherichia coli is assayed using the MHQ technique. In these pilot experiments, low-temperature optical absorbance measurements show the rapid oxidation of heme o3 in the first 137 micros of the reaction, accompanied by the formation of an oxo-ferryl species. X-band EPR spectroscopy shows that a short-living radical intermediate is formed during the oxidation of heme o3. The radical decays within approximately 1 ms concomitant with the oxidation of heme b, and can be attributed to the PM reaction intermediate converting to the oxoferryl intermediate F. The general field of application of the freeze-quench methodology is discussed. Copyright 2004 Elsevier B.V.

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Year:  2004        PMID: 15136155     DOI: 10.1016/j.bbabio.2004.02.006

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  23 in total

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Journal:  Biochemistry       Date:  2012-02-13       Impact factor: 3.162

2.  Oxoferryl-porphyrin radical catalytic intermediate in cytochrome bd oxidases protects cells from formation of reactive oxygen species.

Authors:  Angela Paulus; Sebastiaan Gijsbertus Hendrik Rossius; Madelon Dijk; Simon de Vries
Journal:  J Biol Chem       Date:  2012-01-27       Impact factor: 5.157

Review 3.  Reactive intermediates in cytochrome p450 catalysis.

Authors:  Courtney M Krest; Elizabeth L Onderko; Timothy H Yosca; Julio C Calixto; Richard F Karp; Jovan Livada; Jonathan Rittle; Michael T Green
Journal:  J Biol Chem       Date:  2013-04-30       Impact factor: 5.157

4.  Characterizing millisecond intermediates in hemoproteins using rapid-freeze-quench resonance Raman spectroscopy.

Authors:  Hirotoshi Matsumura; Pierre Moënne-Loccoz
Journal:  Methods Mol Biol       Date:  2014

5.  Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): a study of doubly-spin-labeled T4 lysozyme.

Authors:  Elka R Georgieva; Aritro S Roy; Vladimir M Grigoryants; Petr P Borbat; Keith A Earle; Charles P Scholes; Jack H Freed
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6.  Design, Implementation, Simulation, and Visualization of a Highly Efficient RIM Microfluidic Mixer for Rapid Freeze-Quench of Biological Samples.

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Review 7.  Freeze-quench (57)Fe-Mössbauer spectroscopy: trapping reactive intermediates.

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8.  Rates and equilibrium constants of the ligand-induced conformational transition of an HCN ion channel protein domain determined by DEER spectroscopy.

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Journal:  Phys Chem Chem Phys       Date:  2017-06-14       Impact factor: 3.676

9.  Cryogenic Sample Loading into a Magic Angle Spinning Nuclear Magnetic Resonance Spectrometer that Preserves Cellular Viability.

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10.  Novel Approaches for the Accumulation of Oxygenated Intermediates to Multi-Millimolar Concentrations.

Authors:  Carsten Krebs; Laura M K Dassama; Megan L Matthews; Wei Jiang; John C Price; Victoria Korboukh; Ning Li; J Martin Bollinger
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