Literature DB >> 24639256

Characterizing millisecond intermediates in hemoproteins using rapid-freeze-quench resonance Raman spectroscopy.

Hirotoshi Matsumura1, Pierre Moënne-Loccoz.   

Abstract

The combination of rapid freeze quenching (RFQ) with resonance Raman (RR) spectroscopy represents a unique tool with which to investigate the nature of short-lived intermediates formed during the enzymatic reactions of metalloproteins. Commercially available equipment allows trapping of intermediates within a millisecond to second time scale for low-temperature RR analysis resulting in the direct detection of metal-ligand vibrations and porphyrin skeletal vibrations in hemoproteins. This chapter briefly discusses RFQ-RR studies carried out previously in our laboratory and presents, as a practical example, protocols for the preparation of RFQ samples of the reaction of metmyoglobin with nitric oxide (NO) under anaerobic conditions. Also described are important controls and practical procedures for the analysis of these samples by low-temperature RR spectroscopy.

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Year:  2014        PMID: 24639256      PMCID: PMC4028148          DOI: 10.1007/978-1-62703-794-5_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  19 in total

1.  The ferroxidase reaction of ferritin reveals a diferric mu-1,2 bridging peroxide intermediate in common with other O2-activating non-heme diiron proteins.

Authors:  P Moënne-Loccoz; C Krebs; K Herlihy; D E Edmondson; E C Theil; B H Huynh; T M Loehr
Journal:  Biochemistry       Date:  1999-04-27       Impact factor: 3.162

2.  Ultrafast microfluidic mixer and freeze-quenching device.

Authors:  Yu Lin; Gary J Gerfen; Denis L Rousseau; Syun-Ru Yeh
Journal:  Anal Chem       Date:  2003-10-15       Impact factor: 6.986

3.  Sudden freezing as a technique for the study of rapid reactions.

Authors:  R C BRAY
Journal:  Biochem J       Date:  1961-10       Impact factor: 3.857

4.  The preparation of anaerobic nitric oxide solutions for the study of heme model systems in aqueous and nonaqueous media: some consequences of NO x impurities.

Authors:  Mark D Lim; Ivan M Lorković; Peter C Ford
Journal:  Methods Enzymol       Date:  2005       Impact factor: 1.600

5.  Resonance Raman spectroscopy of metalloproteins.

Authors:  T G Spiro; R S Czernuszewicz
Journal:  Methods Enzymol       Date:  1995       Impact factor: 1.600

Review 6.  Nitric oxide dioxygenase function and mechanism of flavohemoglobin, hemoglobin, myoglobin and their associated reductases.

Authors:  Paul R Gardner
Journal:  J Inorg Biochem       Date:  2005-01       Impact factor: 4.155

7.  Reaction of nitric oxide with heme proteins and model compounds of hemoglobin.

Authors:  V S Sharma; T G Traylor; R Gardiner; H Mizukami
Journal:  Biochemistry       Date:  1987-06-30       Impact factor: 3.162

Review 8.  Microsecond freeze-hyperquenching: development of a new ultrafast micro-mixing and sampling technology and application to enzyme catalysis.

Authors:  Alexey V Cherepanov; Simon De Vries
Journal:  Biochim Biophys Acta       Date:  2004-05-12

9.  Resonance Raman studies of nitric oxide binding to ferric and ferrous hemoproteins: detection of Fe(III)--NO stretching, Fe(III)--N--O bending, and Fe(II)--N--O bending vibrations.

Authors:  B Benko; N T Yu
Journal:  Proc Natl Acad Sci U S A       Date:  1983-11       Impact factor: 11.205

10.  The millisecond intermediate in the reaction of nitric oxide with oxymyoglobin is an iron(III)--nitrato complex, not a peroxynitrite.

Authors:  Erik T Yukl; Simon de Vries; Pierre Moënne-Loccoz
Journal:  J Am Chem Soc       Date:  2009-06-03       Impact factor: 15.419

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  5 in total

1.  Design of Heteronuclear Metalloenzymes.

Authors:  A Bhagi-Damodaran; P Hosseinzadeh; E Mirts; J Reed; I D Petrik; Y Lu
Journal:  Methods Enzymol       Date:  2016-07-26       Impact factor: 1.600

2.  Effect of Outer-Sphere Side Chain Substitutions on the Fate of the trans Iron-Nitrosyl Dimer in Heme/Nonheme Engineered Myoglobins (Fe(B)Mbs): Insights into the Mechanism of Denitrifying NO Reductases.

Authors:  Hirotoshi Matsumura; Saumen Chakraborty; Julian Reed; Yi Lu; Pierre Moënne-Loccoz
Journal:  Biochemistry       Date:  2016-03-29       Impact factor: 3.162

3.  Manganese and Cobalt in the Nonheme-Metal-Binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-Inactive Mechanism.

Authors:  Julian H Reed; Yelu Shi; Qianhong Zhu; Saumen Chakraborty; Evan N Mirts; Igor D Petrik; Ambika Bhagi-Damodaran; Matthew Ross; Pierre Moënne-Loccoz; Yong Zhang; Yi Lu
Journal:  J Am Chem Soc       Date:  2017-08-25       Impact factor: 15.419

4.  Replacing Arginine 33 for Alanine in the Hemophore HasA from Pseudomonas aeruginosa Causes Closure of the H32 Loop in the Apo-Protein.

Authors:  Ritesh Kumar; Yifei Qi; Hirotoshi Matsumura; Scott Lovell; Huili Yao; Kevin P Battaile; Wonpil Im; Pierre Moënne-Loccoz; Mario Rivera
Journal:  Biochemistry       Date:  2016-04-28       Impact factor: 3.162

5.  Replacing the axial ligand tyrosine 75 or its hydrogen bond partner histidine 83 minimally affects hemin acquisition by the hemophore HasAp from Pseudomonas aeruginosa.

Authors:  Ritesh Kumar; Hirotoshi Matsumura; Scott Lovell; Huili Yao; Juan C Rodríguez; Kevin P Battaile; Pierre Moënne-Loccoz; Mario Rivera
Journal:  Biochemistry       Date:  2014-03-26       Impact factor: 3.162

  5 in total

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