Literature DB >> 24368870

Novel Approaches for the Accumulation of Oxygenated Intermediates to Multi-Millimolar Concentrations.

Carsten Krebs1, Laura M K Dassama2, Megan L Matthews3, Wei Jiang2, John C Price2, Victoria Korboukh3, Ning Li2, J Martin Bollinger1.   

Abstract

Metalloenzymes that utilize molecular oxygen as a co-substrate catalyze a wide variety of chemically difficult oxidation reactions. Significant insight into the reaction mechanisms of these enzymes can be obtained by the application of a combination of rapid kinetic and spectroscopic methods to the direct structural characterization of intermediate states. A key limitation of this approach is the low aqueous solubility (< 2 mM) of the co-substrate, O2, which undergoes further dilution (typically by one-third or one-half) upon initiation of reactions by rapid-mixing. This situation imposes a practical upper limit on [O2] (and therefore on the concentration of reactive intermediate(s) that can be rapidly accumulated) of ∼1-1.3 mM in such experiments as they are routinely carried out. However, many spectroscopic methods benefit from or require significantly greater concentrations of the species to be studied. To overcome this problem, we have recently developed two new approaches for the preparation of samples of oxygenated intermediates: (1) direct oxygenation of reduced metalloenzymes using gaseous O2 and (2) the in situ generation of O2 from chlorite catalyzed by the enzyme chlorite dismutase (Cld). Whereas the former method is applicable only to intermediates with half lives of several minutes, owing to the sluggishness of transport of O2 across the gas-liquid interface, the latter approach has been successfully applied to trap several intermediates at high concentration and purity by the freeze-quench method. The in situ approach permits generation of a pulse of at least 5 mM O2 within ∼ 1 ms and accumulation of O2 to effective concentrations of up to ∼ 11 mM (i.e. ∼ 10-fold greater than by the conventional approach). The use of these new techniques for studies of oxygenases and oxidases is discussed.

Entities:  

Keywords:  ferryl; intermediate; iron; non-heme; oxygen; peroxo; superoxo

Year:  2013        PMID: 24368870      PMCID: PMC3870000          DOI: 10.1016/j.ccr.2012.06.020

Source DB:  PubMed          Journal:  Coord Chem Rev        ISSN: 0010-8545            Impact factor:   22.315


  117 in total

1.  Biochemical studies on inositol. IV. Conversion of inositol to glucuronic acid by rat kidney extracts.

Authors:  F C CHARALAMPOUS; C LYRAS
Journal:  J Biol Chem       Date:  1957-09       Impact factor: 5.157

2.  Invited award contribution for ACS Award in Inorganic Chemistry. Geometric and electronic structure contributions to function in bioinorganic chemistry: active sites in non-heme iron enzymes.

Authors:  E I Solomon
Journal:  Inorg Chem       Date:  2001-07-16       Impact factor: 5.165

3.  Enzymatic C-H activation by metal-superoxo intermediates.

Authors:  J Martin Bollinger; Carsten Krebs
Journal:  Curr Opin Chem Biol       Date:  2007-03-19       Impact factor: 8.822

4.  Insight into the mechanism of an iron dioxygenase by resolution of steps following the FeIV=HO species.

Authors:  Piotr K Grzyska; Evan H Appelman; Robert P Hausinger; Denis A Proshlyakov
Journal:  Proc Natl Acad Sci U S A       Date:  2010-02-10       Impact factor: 11.205

5.  Evidence for C-H cleavage by an iron-superoxide complex in the glycol cleavage reaction catalyzed by myo-inositol oxygenase.

Authors:  Gang Xing; Yinghui Diao; Lee M Hoffart; Eric W Barr; K Sandeep Prabhu; Ryan J Arner; C Channa Reddy; Carsten Krebs; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-10       Impact factor: 11.205

6.  Nonheme iron-oxo and -superoxo reactivities: O2 binding and spin inversion probability matter.

Authors:  Kyung-Bin Cho; Hui Chen; Deepa Janardanan; Sam P de Visser; Sason Shaik; Wonwoo Nam
Journal:  Chem Commun (Camb)       Date:  2012-01-17       Impact factor: 6.222

7.  Use of a chemical trigger for electron transfer to characterize a precursor to cluster X in assembly of the iron-radical cofactor of Escherichia coli ribonucleotide reductase.

Authors:  Lana Saleh; Carsten Krebs; Brenda A Ley; Sunail Naik; Boi Hanh Huynh; J Martin Bollinger
Journal:  Biochemistry       Date:  2004-05-25       Impact factor: 3.162

8.  Substrate positioning controls the partition between halogenation and hydroxylation in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Christopher S Neumann; Linde A Miles; Tyler L Grove; Squire J Booker; Carsten Krebs; Christopher T Walsh; J Martin Bollinger
Journal:  Proc Natl Acad Sci U S A       Date:  2009-10-06       Impact factor: 11.205

9.  Substrate-triggered formation and remarkable stability of the C-H bond-cleaving chloroferryl intermediate in the aliphatic halogenase, SyrB2.

Authors:  Megan L Matthews; Courtney M Krest; Eric W Barr; Frédéric H Vaillancourt; Christopher T Walsh; Michael T Green; Carsten Krebs; J Martin Bollinger
Journal:  Biochemistry       Date:  2009-05-26       Impact factor: 3.162

10.  Spectroscopic and electronic structure studies of intermediate X in ribonucleotide reductase R2 and two variants: a description of the FeIV-oxo bond in the FeIII-O-FeIV dimer.

Authors:  Natasa Mitić; Michael D Clay; Lana Saleh; J Martin Bollinger; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2007-06-29       Impact factor: 15.419

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  5 in total

1.  Nuclear Resonance Vibrational Spectroscopy Definition of O2 Intermediates in an Extradiol Dioxygenase: Correlation to Crystallography and Reactivity.

Authors:  Kyle D Sutherlin; Yuko Wasada-Tsutsui; Michael M Mbughuni; Melanie S Rogers; Kiyoung Park; Lei V Liu; Yeonju Kwak; Martin Srnec; Lars H Böttger; Mathieu Frenette; Yoshitaka Yoda; Yasuhiro Kobayashi; Masayuki Kurokuzu; Makina Saito; Makoto Seto; Michael Hu; Jiyong Zhao; E Ercan Alp; John D Lipscomb; Edward I Solomon
Journal:  J Am Chem Soc       Date:  2018-11-26       Impact factor: 15.419

2.  C-H Bond Cleavage Is Rate-Limiting for Oxidative C-P Bond Cleavage by the Mixed Valence Diiron-Dependent Oxygenase PhnZ.

Authors:  Simanga R Gama; Becky Suet Yan Lo; Jacqueline Séguin; Katharina Pallitsch; Friedrich Hammerschmidt; David L Zechel
Journal:  Biochemistry       Date:  2019-05-10       Impact factor: 3.162

3.  A Long-Lived Fe(III)-(Hydroperoxo) Intermediate in the Active H200C Variant of Homoprotocatechuate 2,3-Dioxygenase: Characterization by Mössbauer, Electron Paramagnetic Resonance, and Density Functional Theory Methods.

Authors:  Katlyn K Meier; Melanie S Rogers; Elena G Kovaleva; Michael M Mbughuni; Emile L Bominaar; John D Lipscomb; Eckard Münck
Journal:  Inorg Chem       Date:  2015-10-20       Impact factor: 5.165

Review 4.  Biotechnological Applications of Microbial (Per)chlorate Reduction.

Authors:  Ouwei Wang; John D Coates
Journal:  Microorganisms       Date:  2017-11-24

5.  Elucidation of the Fe(IV)=O intermediate in the catalytic cycle of the halogenase SyrB2.

Authors:  Shaun D Wong; Martin Srnec; Megan L Matthews; Lei V Liu; Yeonju Kwak; Kiyoung Park; Caleb B Bell; E Ercan Alp; Jiyong Zhao; Yoshitaka Yoda; Shinji Kitao; Makoto Seto; Carsten Krebs; J Martin Bollinger; Edward I Solomon
Journal:  Nature       Date:  2013-07-18       Impact factor: 49.962

  5 in total

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