Literature DB >> 15125839

Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.

Takashi Kinebuchi1, Wataru Kagawa, Rima Enomoto, Kozo Tanaka, Kiyoshi Miyagawa, Takehiko Shibata, Hitoshi Kurumizaka, Shigeyuki Yokoyama.   

Abstract

The human Dmc1 protein, a RecA/Rad51 homolog, is a meiosis-specific DNA recombinase that catalyzes homologous pairing. RecA and Rad51 form helical filaments, while Dmc1 forms an octameric ring. In the present study, we crystallized the full-length human Dmc1 protein and solved the structure of the Dmc1 octameric ring. The monomeric structure of the Dmc1 protein closely resembled those of the human and archaeal Rad51 proteins. In addition to the polymerization motif that was previously identified in the Rad51 proteins, we found another hydrogen bonding interaction at the polymer interface, which could explain why Dmc1 forms stable octameric rings instead of helical filaments. Mutagenesis studies identified the inner and outer basic patches that are important for homologous pairing. The inner patch binds both single-stranded and double-stranded DNAs, while the outer one binds single-stranded DNA. Based on these results, we propose a model for the interaction of the Dmc1 rings with DNA.

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Year:  2004        PMID: 15125839     DOI: 10.1016/s1097-2765(04)00218-7

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  49 in total

1.  Crystal structure of the phage T4 recombinase UvsX and its functional interaction with the T4 SF2 helicase UvsW.

Authors:  Stefan Gajewski; Michael R Webb; Vitold Galkin; Edward H Egelman; Kenneth N Kreuzer; Stephen W White
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

Review 2.  Rings, bracelet or snaps: fashionable alternatives for Smc complexes.

Authors:  Catherine E Huang; Mark Milutinovich; Douglas Koshland
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-03-29       Impact factor: 6.237

3.  Long-distance lateral diffusion of human Rad51 on double-stranded DNA.

Authors:  Annette Granéli; Caitlyn C Yeykal; Ragan B Robertson; Eric C Greene
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

4.  Structural transitions within human Rad51 nucleoprotein filaments.

Authors:  Ragan B Robertson; Dana N Moses; YoungHo Kwon; Pamela Chan; Peter Chi; Hannah Klein; Patrick Sung; Eric C Greene
Journal:  Proc Natl Acad Sci U S A       Date:  2009-07-21       Impact factor: 11.205

5.  Structural analysis of Shu proteins reveals a DNA binding role essential for resisting damage.

Authors:  Yuyong Tao; Xu Li; Yiwei Liu; Jianbin Ruan; Shali Qi; Liwen Niu; Maikun Teng
Journal:  J Biol Chem       Date:  2012-03-30       Impact factor: 5.157

6.  An interaction between DNA polymerase and helicase is essential for the high processivity of the bacteriophage T7 replisome.

Authors:  Arkadiusz W Kulczyk; Barak Akabayov; Seung-Joo Lee; Mihnea Bostina; Steven A Berkowitz; Charles C Richardson
Journal:  J Biol Chem       Date:  2012-09-12       Impact factor: 5.157

Review 7.  Clarifying the mechanics of DNA strand exchange in meiotic recombination.

Authors:  Matthew J Neale; Scott Keeney
Journal:  Nature       Date:  2006-07-13       Impact factor: 49.962

8.  Plant DNA recombinases: a long way to go.

Authors:  Rajani Kant Chittela; Jayashree K Sainis
Journal:  J Nucleic Acids       Date:  2009-12-13

9.  Three new structures of left-handed RADA helical filaments: structural flexibility of N-terminal domain is critical for recombinase activity.

Authors:  Yu-Wei Chang; Tzu-Ping Ko; Chien-Der Lee; Yuan-Chih Chang; Kuei-Ann Lin; Chia-Seng Chang; Andrew H-J Wang; Ting-Fang Wang
Journal:  PLoS One       Date:  2009-03-19       Impact factor: 3.240

10.  Structure of the hDmc1-ssDNA filament reveals the principles of its architecture.

Authors:  Andrei L Okorokov; Yuriy L Chaban; Dmitry V Bugreev; Julie Hodgkinson; Alexander V Mazin; Elena V Orlova
Journal:  PLoS One       Date:  2010-01-06       Impact factor: 3.240

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