Literature DB >> 22465956

Structural analysis of Shu proteins reveals a DNA binding role essential for resisting damage.

Yuyong Tao1, Xu Li, Yiwei Liu, Jianbin Ruan, Shali Qi, Liwen Niu, Maikun Teng.   

Abstract

The yeast Shu complex, consisting of the proteins Shu1, Shu2, Psy3, and Csm2, maintains genomic stability by coupling post-replication repair to homologous recombination. However, a lack of biochemical and structural information on the Shu proteins precludes revealing their precise roles within the pathway. Here, we report on the 1.9-Å crystal structure of the Psy3-Csm2 complex. The crystal structure shows that Psy3 forms a heterodimer with Csm2 mainly through a hydrophobic core. Unexpectedly, Psy3 and Csm2 share a similar architecture that closely resembles the ATPase core domain of Rad51. The L2 loop present in Psy3 and Csm2 is similar to that of Rad51 and confers the DNA binding activity of the Shu complex. As with Rad51, the Shu complex appears to form a nucleoprotein filament by binding nonspecifically to DNA. Structure-based mutagenesis studies have demonstrated that the DNA binding activity of the Shu complex is essential for repair of the methyl methanesulfonate-induced DNA damage. Our findings provide good foundations for the understanding of the Srs2 regulation by the Shu complex.

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Year:  2012        PMID: 22465956      PMCID: PMC3370205          DOI: 10.1074/jbc.M111.334698

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  32 in total

1.  Two RING finger proteins mediate cooperation between ubiquitin-conjugating enzymes in DNA repair.

Authors:  H D Ulrich; S Jentsch
Journal:  EMBO J       Date:  2000-07-03       Impact factor: 11.598

2.  The Srs2 helicase prevents recombination by disrupting Rad51 nucleoprotein filaments.

Authors:  Xavier Veaute; Josette Jeusset; Christine Soustelle; Stephen C Kowalczykowski; Eric Le Cam; Francis Fabre
Journal:  Nature       Date:  2003-05-15       Impact factor: 49.962

3.  RAD6-dependent DNA repair is linked to modification of PCNA by ubiquitin and SUMO.

Authors:  Carsten Hoege; Boris Pfander; George-Lucian Moldovan; George Pyrowolakis; Stefan Jentsch
Journal:  Nature       Date:  2002-09-12       Impact factor: 49.962

4.  Noncanonical MMS2-encoded ubiquitin-conjugating enzyme functions in assembly of novel polyubiquitin chains for DNA repair.

Authors:  R M Hofmann; C M Pickart
Journal:  Cell       Date:  1999-03-05       Impact factor: 41.582

5.  UBC13, a DNA-damage-inducible gene, is a member of the error-free postreplication repair pathway in Saccharomyces cerevisiae.

Authors:  J Brusky; Y Zhu; W Xiao
Journal:  Curr Genet       Date:  2000-03       Impact factor: 3.886

Review 6.  DNA postreplication repair and mutagenesis in Saccharomyces cerevisiae.

Authors:  S Broomfield; T Hryciw; W Xiao
Journal:  Mutat Res       Date:  2001-08-09       Impact factor: 2.433

7.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

8.  Insights into DNA recombination from the structure of a RAD51-BRCA2 complex.

Authors:  Luca Pellegrini; David S Yu; Thomas Lo; Shubha Anand; MiYoung Lee; Tom L Blundell; Ashok R Venkitaraman
Journal:  Nature       Date:  2002-11-10       Impact factor: 49.962

9.  DNA helicase Srs2 disrupts the Rad51 presynaptic filament.

Authors:  Lumir Krejci; Stephen Van Komen; Ying Li; Jana Villemain; Mothe Sreedhar Reddy; Hannah Klein; Thomas Ellenberger; Patrick Sung
Journal:  Nature       Date:  2003-05-15       Impact factor: 49.962

10.  Automated main-chain model building by template matching and iterative fragment extension.

Authors:  Thomas C Terwilliger
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-12-19
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  22 in total

Review 1.  Biochemical attributes of mitotic and meiotic presynaptic complexes.

Authors:  J Brooks Crickard; Eric C Greene
Journal:  DNA Repair (Amst)       Date:  2018-08-23

Review 2.  Mediators of homologous DNA pairing.

Authors:  Alex Zelensky; Roland Kanaar; Claire Wyman
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-09       Impact factor: 10.005

3.  The Shu complex is a conserved regulator of homologous recombination.

Authors:  Julieta Martino; Kara A Bernstein
Journal:  FEMS Yeast Res       Date:  2016-09-01       Impact factor: 2.796

4.  Evolutionary and functional analysis of the invariant SWIM domain in the conserved Shu2/SWS1 protein family from Saccharomyces cerevisiae to Homo sapiens.

Authors:  Stephen K Godin; Camille Meslin; Faiz Kabbinavar; Dominique S Bratton-Palmer; Christina Hornack; Michael J Mihalevic; Kyle Yoshida; Meghan Sullivan; Nathan L Clark; Kara A Bernstein
Journal:  Genetics       Date:  2015-02-05       Impact factor: 4.562

5.  Shu1 promotes homolog bias of meiotic recombination in Saccharomyces cerevisiae.

Authors:  Soogil Hong; Keun Pil Kim
Journal:  Mol Cells       Date:  2013-11-08       Impact factor: 5.034

6.  Promotion of Homologous Recombination by SWS-1 in Complex with RAD-51 Paralogs in Caenorhabditis elegans.

Authors:  T Brooke McClendon; Meghan R Sullivan; Kara A Bernstein; Judith L Yanowitz
Journal:  Genetics       Date:  2016-03-02       Impact factor: 4.562

Review 7.  An Overview of the Molecular Mechanisms of Recombinational DNA Repair.

Authors:  Stephen C Kowalczykowski
Journal:  Cold Spring Harb Perspect Biol       Date:  2015-11-02       Impact factor: 10.005

Review 8.  Novel insights into RAD51 activity and regulation during homologous recombination and DNA replication.

Authors:  Stephen K Godin; Meghan R Sullivan; Kara A Bernstein
Journal:  Biochem Cell Biol       Date:  2016-03-31       Impact factor: 3.626

9.  A new protein complex promoting the assembly of Rad51 filaments.

Authors:  Hiroyuki Sasanuma; Maki S Tawaramoto; Jessica P Lao; Harumi Hosaka; Eri Sanda; Mamoru Suzuki; Eiki Yamashita; Neil Hunter; Miki Shinohara; Atsushi Nakagawa; Akira Shinohara
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  The logic and mechanism of homologous recombination partner choice.

Authors:  Soogil Hong; Youngjin Sung; Mi Yu; Minsu Lee; Nancy Kleckner; Keun P Kim
Journal:  Mol Cell       Date:  2013-08-22       Impact factor: 17.970

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