Literature DB >> 19622740

Structural transitions within human Rad51 nucleoprotein filaments.

Ragan B Robertson1, Dana N Moses, YoungHo Kwon, Pamela Chan, Peter Chi, Hannah Klein, Patrick Sung, Eric C Greene.   

Abstract

Rad51 is a core component of the eukaryotic homologous recombination machinery and is responsible for key mechanistic steps during strand invasion. Higher order oligomers of Rad51 display a remarkable degree of structural variation, forming rings, compressed filaments, and elongated filaments. It is unclear whether Rad51 can transition directly between these different oligomeric structures without disassembling first into monomers. We have used single-molecule microscopy to investigate the behavior of human Rad51 assembled on double-stranded DNA. Our results show that human Rad51 can form elongated nucleoprotein filaments on DNA, but ATP hydrolysis causes a decrease in their length without concomitant dissociation of protein. Compressed Rad51 filaments can re-elongate when presented with either ATP or the non-hydrolyzable analog AMP-PNP, and these cycles of elongation and compression are reversible. A Rad51 mutant deficient in ATP hydrolysis is locked into an extended conformation that is incapable of transitioning to a compressed filament. Similarly, wild-type Rad51 bound to DNA in the presence of AMP-PNP was trapped in the elongated state. Proteins incapable of transitioning to the compressed state were also highly resistant to dissociation from the DNA. Taken together, our results indicate that nucleotide hydrolysis by human Rad51 triggers a reversible structural transition leading to filaments with reduced helical pitch.

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Year:  2009        PMID: 19622740      PMCID: PMC2722365          DOI: 10.1073/pnas.0811465106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

1.  The Rad51-dependent pairing of long DNA substrates is stabilized by replication protein A.

Authors:  Aimee L Eggler; Ross B Inman; Michael M Cox
Journal:  J Biol Chem       Date:  2002-08-06       Impact factor: 5.157

Review 2.  Molecular views of recombination proteins and their control.

Authors:  Stephen C West
Journal:  Nat Rev Mol Cell Biol       Date:  2003-06       Impact factor: 94.444

Review 3.  Rad51 recombinase and recombination mediators.

Authors:  Patrick Sung; Lumir Krejci; Stephen Van Komen; Michael G Sehorn
Journal:  J Biol Chem       Date:  2003-08-11       Impact factor: 5.157

Review 4.  DNA damage checkpoint and repair centers.

Authors:  Michael Lisby; Rodney Rothstein
Journal:  Curr Opin Cell Biol       Date:  2004-06       Impact factor: 8.382

5.  Direct imaging of human Rad51 nucleoprotein dynamics on individual DNA molecules.

Authors:  Jovencio Hilario; Ichiro Amitani; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-02       Impact factor: 11.205

6.  Archaeal RadA protein binds DNA as both helical filaments and octameric rings.

Authors:  S Yang; X Yu; E M Seitz; S C Kowalczykowski; E H Egelman
Journal:  J Mol Biol       Date:  2001-12-14       Impact factor: 5.469

Review 7.  Role of RAD52 epistasis group genes in homologous recombination and double-strand break repair.

Authors:  Lorraine S Symington
Journal:  Microbiol Mol Biol Rev       Date:  2002-12       Impact factor: 11.056

8.  ATP hydrolysis by mammalian RAD51 has a key role during homology-directed DNA repair.

Authors:  Jeremy M Stark; Peng Hu; Andrew J Pierce; Mary Ellen Moynahan; Nathan Ellis; Maria Jasin
Journal:  J Biol Chem       Date:  2002-03-28       Impact factor: 5.157

9.  Structural basis for octameric ring formation and DNA interaction of the human homologous-pairing protein Dmc1.

Authors:  Takashi Kinebuchi; Wataru Kagawa; Rima Enomoto; Kozo Tanaka; Kiyoshi Miyagawa; Takehiko Shibata; Hitoshi Kurumizaka; Shigeyuki Yokoyama
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

10.  Counting RAD51 proteins disassembling from nucleoprotein filaments under tension.

Authors:  Joost van Mameren; Mauro Modesti; Roland Kanaar; Claire Wyman; Erwin J G Peterman; Gijs J L Wuite
Journal:  Nature       Date:  2008-12-07       Impact factor: 49.962

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  23 in total

Review 1.  Single-molecule views of protein movement on single-stranded DNA.

Authors:  Taekjip Ha; Alexander G Kozlov; Timothy M Lohman
Journal:  Annu Rev Biophys       Date:  2012-02-23       Impact factor: 12.981

2.  RAD51 mutants cause replication defects and chromosomal instability.

Authors:  Tae Moon Kim; Jun Ho Ko; Lingchuan Hu; Sung-A Kim; Alexander J R Bishop; Jan Vijg; Cristina Montagna; Paul Hasty
Journal:  Mol Cell Biol       Date:  2012-07-09       Impact factor: 4.272

3.  Crystal structure of the phage T4 recombinase UvsX and its functional interaction with the T4 SF2 helicase UvsW.

Authors:  Stefan Gajewski; Michael R Webb; Vitold Galkin; Edward H Egelman; Kenneth N Kreuzer; Stephen W White
Journal:  J Mol Biol       Date:  2010-10-28       Impact factor: 5.469

Review 4.  Guidelines for DNA recombination and repair studies: Mechanistic assays of DNA repair processes.

Authors:  Hannah L Klein; Kenny K H Ang; Michelle R Arkin; Emily C Beckwitt; Yi-Hsuan Chang; Jun Fan; Youngho Kwon; Michael J Morten; Sucheta Mukherjee; Oliver J Pambos; Hafez El Sayyed; Elizabeth S Thrall; João P Vieira-da-Rocha; Quan Wang; Shuang Wang; Hsin-Yi Yeh; Julie S Biteen; Peter Chi; Wolf-Dietrich Heyer; Achillefs N Kapanidis; Joseph J Loparo; Terence R Strick; Patrick Sung; Bennett Van Houten; Hengyao Niu; Eli Rothenberg
Journal:  Microb Cell       Date:  2019-01-07

5.  Interchromosomal homology searches drive directional ALT telomere movement and synapsis.

Authors:  Nam Woo Cho; Robert L Dilley; Michael A Lampson; Roger A Greenberg
Journal:  Cell       Date:  2014-09-25       Impact factor: 41.582

Review 6.  Homologous recombination and the repair of DNA double-strand breaks.

Authors:  William Douglass Wright; Shanaya Shital Shah; Wolf-Dietrich Heyer
Journal:  J Biol Chem       Date:  2018-03-29       Impact factor: 5.157

7.  Supported lipid bilayers and DNA curtains for high-throughput single-molecule studies.

Authors:  Ilya J Finkelstein; Eric C Greene
Journal:  Methods Mol Biol       Date:  2011

8.  Watching individual proteins acting on single molecules of DNA.

Authors:  Ichiro Amitani; Bian Liu; Christopher C Dombrowski; Ronald J Baskin; Stephen C Kowalczykowski
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

Review 9.  Visualizing protein-DNA interactions at the single-molecule level.

Authors:  Jovencio Hilario; Stephen C Kowalczykowski
Journal:  Curr Opin Chem Biol       Date:  2009-11-27       Impact factor: 8.822

Review 10.  Visualizing protein movement on DNA at the single-molecule level using DNA curtains.

Authors:  Timothy D Silverstein; Bryan Gibb; Eric C Greene
Journal:  DNA Repair (Amst)       Date:  2014-03-02
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