Literature DB >> 15116069

Ring-shaped architecture of RecR: implications for its role in homologous recombinational DNA repair.

Byung Il Lee1, Kyoung Hoon Kim, Soo Jeong Park, Soo Hyun Eom, Hyun Kyu Song, Se Won Suh.   

Abstract

RecR, together with RecF and RecO, facilitates RecA loading in the RecF pathway of homologous recombinational DNA repair in procaryotes. The human Rad52 protein is a functional counterpart of RecFOR. We present here the crystal structure of RecR from Deinococcus radiodurans (DR RecR). A monomer of DR RecR has a two-domain structure: the N-terminal domain with a helix-hairpin-helix (HhH) motif and the C-terminal domain with a Cys4 zinc-finger motif, a Toprim domain and a Walker B motif. Four such monomers form a ring-shaped tetramer of 222 symmetry with a central hole of 30-35 angstroms diameter. In the crystal, two tetramers are concatenated, implying that the RecR tetramer is capable of opening and closing. We also show that DR RecR binds to both dsDNA and ssDNA, and that its HhH motif is essential for DNA binding.

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Year:  2004        PMID: 15116069      PMCID: PMC424415          DOI: 10.1038/sj.emboj.7600222

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  67 in total

1.  The importance of repairing stalled replication forks.

Authors:  M M Cox; M F Goodman; K N Kreuzer; D J Sherratt; S J Sandler; K J Marians
Journal:  Nature       Date:  2000-03-02       Impact factor: 49.962

Review 2.  A tale of toroids in DNA metabolism.

Authors:  M M Hingorani; M O'Donnell
Journal:  Nat Rev Mol Cell Biol       Date:  2000-10       Impact factor: 94.444

Review 3.  DNA polymerase beta in abasic site repair: a structurally conserved helix-hairpin-helix motif in lesion detection by base excision repair enzymes.

Authors:  G P Mullen; S H Wilson
Journal:  Biochemistry       Date:  1997-04-22       Impact factor: 3.162

4.  Interactions of RecF protein with RecO, RecR, and single-stranded DNA binding proteins reveal roles for the RecF-RecO-RecR complex in DNA repair and recombination.

Authors:  S P Hegde; M H Qin; X H Li; M A Atkinson; A J Clark; M Rajagopalan; M V Madiraju
Journal:  Proc Natl Acad Sci U S A       Date:  1996-12-10       Impact factor: 11.205

5.  Purification and preliminary characterization of the Escherichia coli K-12 recF protein.

Authors:  T J Griffin; R D Kolodner
Journal:  J Bacteriol       Date:  1990-11       Impact factor: 3.490

6.  Crystallization of a member of the recFOR DNA repair pathway, RecO, with and without bound oligonucleotide.

Authors:  Shelly Aono; Thomas Hartsch; Ursula Schulze-Gahmen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2003-02-21

Review 7.  Mechanisms of human DNA repair: an update.

Authors:  Markus Christmann; Maja T Tomicic; Wynand P Roos; Bernd Kaina
Journal:  Toxicology       Date:  2003-11-15       Impact factor: 4.221

Review 8.  Conserved domains in DNA repair proteins and evolution of repair systems.

Authors:  L Aravind; D R Walker; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

9.  Automated MAD and MIR structure solution.

Authors:  T C Terwilliger; J Berendzen
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-04

10.  Evidence for ATP binding and double-stranded DNA binding by Escherichia coli RecF protein.

Authors:  M V Madiraju; A J Clark
Journal:  J Bacteriol       Date:  1992-12       Impact factor: 3.490

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  40 in total

1.  Allosteric effects of SSB C-terminal tail on assembly of E. coli RecOR proteins.

Authors:  Min Kyung Shinn; Alexander G Kozlov; Timothy M Lohman
Journal:  Nucleic Acids Res       Date:  2021-02-26       Impact factor: 16.971

2.  Establishment of Tn5096-based transposon mutagenesis in Gordonia polyisoprenivorans.

Authors:  Quyen Banh; Matthias Arenskötter; Alexander Steinbüchel
Journal:  Appl Environ Microbiol       Date:  2005-09       Impact factor: 4.792

3.  Crystal structure and DNA-binding analysis of RecO from Deinococcus radiodurans.

Authors:  Ingar Leiros; Joanna Timmins; David R Hall; Sean McSweeney
Journal:  EMBO J       Date:  2005-02-17       Impact factor: 11.598

4.  Structural conservation of RecF and Rad50: implications for DNA recognition and RecF function.

Authors:  Olga Koroleva; Nodar Makharashvili; Charmain T Courcelle; Justin Courcelle; Sergey Korolev
Journal:  EMBO J       Date:  2007-01-25       Impact factor: 11.598

5.  Crystal structure and mutational study of RecOR provide insight into its mode of DNA binding.

Authors:  Joanna Timmins; Ingar Leiros; Sean McSweeney
Journal:  EMBO J       Date:  2007-06-21       Impact factor: 11.598

6.  RecO is essential for DNA damage repair in Deinococcus radiodurans.

Authors:  Guangzhi Xu; Liangyan Wang; Huan Chen; Huiming Lu; Nanjiao Ying; Bing Tian; Yuejin Hua
Journal:  J Bacteriol       Date:  2008-01-25       Impact factor: 3.490

Review 7.  SSB as an organizer/mobilizer of genome maintenance complexes.

Authors:  Robert D Shereda; Alexander G Kozlov; Timothy M Lohman; Michael M Cox; James L Keck
Journal:  Crit Rev Biochem Mol Biol       Date:  2008 Sep-Oct       Impact factor: 8.250

8.  RecR-mediated modulation of RecF dimer specificity for single- and double-stranded DNA.

Authors:  Nodar Makharashvili; Tian Mi; Olga Koroleva; Sergey Korolev
Journal:  J Biol Chem       Date:  2008-11-17       Impact factor: 5.157

9.  Manual classification strategies in the ECOD database.

Authors:  Hua Cheng; Yuxing Liao; R Dustin Schaeffer; Nick V Grishin
Journal:  Proteins       Date:  2015-05-08

10.  Structure and function of a novel endonuclease acting on branched DNA substrates.

Authors:  Bin Ren; Joelle Kühn; Laurence Meslet-Cladiere; Julien Briffotaux; Cedric Norais; Regis Lavigne; Didier Flament; Rudolf Ladenstein; Hannu Myllykallio
Journal:  EMBO J       Date:  2009-07-16       Impact factor: 11.598

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