Literature DB >> 15051812

Histone 3 lysine 4 methylation during the pre-B to immature B-cell transition.

Eric J Perkins1, Barbara L Kee, Dale A Ramsden.   

Abstract

The relationship between chromatin modification and lymphocyte development is still poorly understood. Here we show a correlation between methylation of lysine 4 on histone 3 (H3-K4) and activation of several loci required for the pre-B cell to immature B-cell developmental transition. A critical step in this transition is the induction of V(D)J recombination at the Igkappa locus. Upon activation of Igkappa recombination, a >10-fold enrichment of both di- and trimethylated H3-K4 is observed at Jkappa targeting signals, but not at an analogous targeting signal in the T-cell receptor alpha locus or, surprisingly, at several Vkappa signals. However, H3-K4 methylation is restricted to the actively recombining fraction of Jkappa recombination targeting signals, consistent with a direct relationship between H3-K4 methylation and signal activity. Correlations between increased H3-K4 methylation and induction of transcription are also observed at some, but not all, loci where transcription is induced. H3-K4 methylation may therefore be a widely used but not universal means for controlling chromatin activity in this developmental transition.

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Year:  2004        PMID: 15051812      PMCID: PMC390374          DOI: 10.1093/nar/gkh523

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  35 in total

1.  Methylation of histone H3 at lysine 4 is highly conserved and correlates with transcriptionally active nuclei in Tetrahymena.

Authors:  B D Strahl; R Ohba; R G Cook; C D Allis
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-21       Impact factor: 11.205

Review 2.  Unequal access: regulating V(D)J recombination through chromatin remodeling.

Authors:  D B Roth; S Y Roth
Journal:  Cell       Date:  2000-11-22       Impact factor: 41.582

3.  Histone acetylation and hSWI/SNF remodeling act in concert to stimulate V(D)J cleavage of nucleosomal DNA.

Authors:  J Kwon; K B Morshead; J R Guyon; R E Kingston; M A Oettinger
Journal:  Mol Cell       Date:  2000-11       Impact factor: 17.970

4.  Assembly of the RAG1/RAG2 synaptic complex.

Authors:  Cynthia L Mundy; Nadja Patenge; Adam G W Matthews; Marjorie A Oettinger
Journal:  Mol Cell Biol       Date:  2002-01       Impact factor: 4.272

Review 5.  The mechanism and regulation of chromosomal V(D)J recombination.

Authors:  Craig H Bassing; Wojciech Swat; Frederick W Alt
Journal:  Cell       Date:  2002-04       Impact factor: 41.582

6.  Methylation of histone H3 Lys 4 in coding regions of active genes.

Authors:  Bradley E Bernstein; Emily L Humphrey; Rachel L Erlich; Robert Schneider; Peter Bouman; Jun S Liu; Tony Kouzarides; Stuart L Schreiber
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

Review 7.  Control of chromatin accessibility for V(D)J recombination by interleukin-7.

Authors:  J Huang; K Muegge
Journal:  J Leukoc Biol       Date:  2001-06       Impact factor: 4.962

8.  Sensing of intermediates in V(D)J recombination by ATM.

Authors:  Eric J Perkins; Ayyappan Nair; Dale O Cowley; Terry Van Dyke; Yung Chang; Dale A Ramsden
Journal:  Genes Dev       Date:  2002-01-15       Impact factor: 11.361

Review 9.  The role of MLL in hematopoiesis and leukemia.

Authors:  Patricia Ernst; Jing Wang; Stanley J Korsmeyer
Journal:  Curr Opin Hematol       Date:  2002-07       Impact factor: 3.284

Review 10.  V(D)J recombination: RAG proteins, repair factors, and regulation.

Authors:  Martin Gellert
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

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  18 in total

1.  Histone H3R2 symmetric dimethylation and histone H3K4 trimethylation are tightly correlated in eukaryotic genomes.

Authors:  Chih-Chi Yuan; Adam G W Matthews; Yi Jin; Chang Feng Chen; Brad A Chapman; Toshiro K Ohsumi; Karen C Glass; Tatiana G Kutateladze; Mark L Borowsky; Kevin Struhl; Marjorie A Oettinger
Journal:  Cell Rep       Date:  2012-02-23       Impact factor: 9.423

2.  A plant homeodomain in RAG-2 that binds Hypermethylated lysine 4 of histone H3 is necessary for efficient antigen-receptor-gene rearrangement.

Authors:  Yun Liu; Ramesh Subrahmanyam; Tirtha Chakraborty; Ranjan Sen; Stephen Desiderio
Journal:  Immunity       Date:  2007-10-11       Impact factor: 31.745

3.  The BCL11A transcription factor directly activates RAG gene expression and V(D)J recombination.

Authors:  Baeck-seung Lee; Joseph D Dekker; Bum-kyu Lee; Vishwanath R Iyer; Barry P Sleckman; Arthur L Shaffer; Gregory C Ippolito; Philip W Tucker
Journal:  Mol Cell Biol       Date:  2013-02-25       Impact factor: 4.272

4.  H3K4me3 induces allosteric conformational changes in the DNA-binding and catalytic regions of the V(D)J recombinase.

Authors:  John Bettridge; Chan Hyun Na; Akhilesh Pandey; Stephen Desiderio
Journal:  Proc Natl Acad Sci U S A       Date:  2017-02-07       Impact factor: 11.205

5.  Corrected and Republished from: BCL11A Is a Critical Component of a Transcriptional Network That Activates RAG Expression and V(D)J Recombination.

Authors:  Baeck-Seung Lee; Bum-Kyu Lee; Vishwanath R Iyer; Barry P Sleckman; Arthur L Shaffer; Gregory C Ippolito; Haley O Tucker; Joseph D Dekker
Journal:  Mol Cell Biol       Date:  2017-12-13       Impact factor: 4.272

6.  Monomethyl histone H3 lysine 4 as an epigenetic mark for silenced euchromatin in Chlamydomonas.

Authors:  Karin van Dijk; Katherine E Marley; Byeong-ryool Jeong; Jianping Xu; Jennifer Hesson; Ronald L Cerny; Jakob H Waterborg; Heriberto Cerutti
Journal:  Plant Cell       Date:  2005-08-12       Impact factor: 11.277

7.  Regulated large-scale nucleosome density patterns and precise nucleosome positioning correlate with V(D)J recombination.

Authors:  Sandhya R Pulivarthy; Mattia Lion; Guray Kuzu; Adam G W Matthews; Mark L Borowsky; John Morris; Robert E Kingston; Jonathan H Dennis; Michael Y Tolstorukov; Marjorie A Oettinger
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-03       Impact factor: 11.205

Review 8.  RAG: a recombinase diversified.

Authors:  Adam G W Matthews; Marjorie A Oettinger
Journal:  Nat Immunol       Date:  2009-07-21       Impact factor: 25.606

9.  RAG2 PHD finger couples histone H3 lysine 4 trimethylation with V(D)J recombination.

Authors:  Adam G W Matthews; Alex J Kuo; Santiago Ramón-Maiques; Sunmi Han; Karen S Champagne; Dmitri Ivanov; Mercedes Gallardo; Dylan Carney; Peggie Cheung; David N Ciccone; Kay L Walter; Paul J Utz; Yang Shi; Tatiana G Kutateladze; Wei Yang; Or Gozani; Marjorie A Oettinger
Journal:  Nature       Date:  2007-11-21       Impact factor: 49.962

10.  The PHD domain of the sea urchin RAG2 homolog, SpRAG2L, recognizes dimethylated lysine 4 in histone H3 tails.

Authors:  David R Wilson; Darrell D Norton; Sebastian D Fugmann
Journal:  Dev Comp Immunol       Date:  2008-05-08       Impact factor: 3.636

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