Literature DB >> 15012131

Enantioselective molecular recognition between beta-sheets.

De Michael Chung1, James S Nowick.   

Abstract

This communication asks whether homochiral or heterochiral interaction is preferred between enantiomeric beta-sheets and finds that homochiral pairing is strongly preferred. Interactions between beta-sheets occur widely among proteins through pairing of the hydrogen-bonding edges. Although the hydrogen-bonding edges of both l- and d-beta-sheets put forth the same pattern of hydrogen-bond donor and acceptor groups, the side chains point in opposite directions. Homochiral pairing of beta-sheets generates structures in which the pleats and side chains of adjacent beta-strands are parallel to each other, while heterochiral pairing of beta-sheets generates structures in which the pleats and side chains are antiparallel. To test which pairing is preferred, we have prepared and studied the interactions of beta-sheets 1a-d, which comprise all l-amino acids, and beta-sheets 2a-c, which comprise all d-amino acids. Previous studies in our laboratory have established that these compounds form well-defined dimers in organic solvents. In the current study, 1H NMR experiments establish that when the l-beta-sheets (1) are mixed with the enantiomeric d-beta-sheets (2), homochiral beta-sheet dimers predominate, and only small quantities of heterochiral beta-sheet dimers form. Ratios of homochiral and heterochiral dimers ranging from 95.8:4.2 to 98.5:1.5 are measured in CDCl3 at 253 K, which correspond to statistically corrected free-energy differences of 3.1-4.2 kcal/mol (0.6-0.8 kcal/mol per interacting residue). Possible explanations for the high enantioselectivity of molecular recognition between beta-sheets include favorable nonbonded contacts between the adjacent beta-strands of the homochiral beta-sheets and poor fit of the heterochiral beta-strands, which should twist in opposite directions.

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Year:  2004        PMID: 15012131     DOI: 10.1021/ja031632z

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  High-resolution structures of a heterochiral coiled coil.

Authors:  David E Mortenson; Jay D Steinkruger; Dale F Kreitler; Dominic V Perroni; Gregory P Sorenson; Lijun Huang; Ritesh Mittal; Hyun Gi Yun; Benjamin R Travis; Mahesh K Mahanthappa; Katrina T Forest; Samuel H Gellman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  Exploring beta-sheet structure and interactions with chemical model systems.

Authors:  James S Nowick
Journal:  Acc Chem Res       Date:  2008-09-18       Impact factor: 22.384

Review 3.  Smart self-assembled hybrid hydrogel biomaterials.

Authors:  Jindřich Kopeček; Jiyuan Yang
Journal:  Angew Chem Int Ed Engl       Date:  2012-07-23       Impact factor: 15.336

Review 4.  The supramolecular chemistry of β-sheets.

Authors:  Pin-Nan Cheng; Johnny D Pham; James S Nowick
Journal:  J Am Chem Soc       Date:  2013-04-02       Impact factor: 15.419

5.  Giant macrolactams based on β-sheet peptides.

Authors:  Pin-Nan Cheng; James S Nowick
Journal:  J Org Chem       Date:  2011-04-15       Impact factor: 4.354

6.  Self-assembly of left- and right-handed molecular screws.

Authors:  Fei Xu; I John Khan; Kenneth McGuinness; Avanish S Parmar; Teresita Silva; N Sanjeeva Murthy; Vikas Nanda
Journal:  J Am Chem Soc       Date:  2013-12-03       Impact factor: 15.419

7.  D-polyglutamine amyloid recruits L-polyglutamine monomers and kills cells.

Authors:  Karunakar Kar; Irene Arduini; Kenneth W Drombosky; Patrick C A van der Wel; Ronald Wetzel
Journal:  J Mol Biol       Date:  2013-11-28       Impact factor: 5.469

8.  An artificial beta-sheet that dimerizes through parallel beta-sheet interactions.

Authors:  Sergiy Levin; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-10-06       Impact factor: 15.419

9.  Functionalized analogues of an unnatural amino acid that mimics a tripeptide beta-strand.

Authors:  Tatyana V Khasanova; Omid Khakshoor; James S Nowick
Journal:  Org Lett       Date:  2008-10-21       Impact factor: 6.005

10.  Macrocyclic beta-sheet peptides that mimic protein quaternary structure through intermolecular beta-sheet interactions.

Authors:  Omid Khakshoor; Borries Demeler; James S Nowick
Journal:  J Am Chem Soc       Date:  2007-04-10       Impact factor: 15.419

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