Literature DB >> 14872124

Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning.

Toshimichi Fujiwara1, Yasuto Todokoro, Hajime Yanagishita, Midori Tawarayama, Toshiyuki Kohno, Kaori Wakamatsu, Hideo Akutsu.   

Abstract

Carbon-13 and nitrogen-15 signals of fully isotope-labeled 15-residue peptide, glycinated mastoparan-X, in a solid state were assigned by two- and three-dimensional NMR experiments under magic-angle spinning conditions. Intra-residue spin connectivities were obtained with multidimensional correlation experiments for C'-C(alpha)-C(beta) and N-C(alpha)-C(beta). Sequence specific assignments were performed with inter-residue C(alpha)-C(alpha) and N-C(alpha)C(beta) correlation experiments. Pulse sequences for these experiments have mixing periods under recoupled zero- and double-quantum (13)C-(13)C and (15)N-(13)C dipolar interactions. These correlation spectra allowed the complete assignments of (13)C and (15)N backbone and (13)C(beta) signals. Chemical shift analysis of the (13)C and (15)N signals based on empirical and quantum chemical databases for proteins indicated that the backbone between residues 3 and 14 forms alpha-helix and residue 2 has extended conformation in the solid state. This structure was compared with the G-protein- and membrane-bound structures of mastoparan-X.

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Year:  2004        PMID: 14872124     DOI: 10.1023/B:JNMR.0000015377.17021.b0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  38 in total

1.  Selective and extensive 13C labeling of a membrane protein for solid-state NMR investigations.

Authors:  M Hong; K Jakes
Journal:  J Biomol NMR       Date:  1999-05       Impact factor: 2.835

Review 2.  Solid-state NMR spectroscopy applied to membrane proteins.

Authors:  H J de Groot
Journal:  Curr Opin Struct Biol       Date:  2000-10       Impact factor: 6.809

3.  Membrane-bound conformation of mastoparan-X, a G-protein-activating peptide.

Authors:  K Wakamatsu; A Okada; T Miyazawa; M Ohya; T Higashijima
Journal:  Biochemistry       Date:  1992-06-23       Impact factor: 3.162

Review 4.  Dipolar recoupling in MAS spectra of biological solids.

Authors:  R G Griffin
Journal:  Nat Struct Biol       Date:  1998-07

5.  Soft-triple resonance solid-state NMR experiments for assignments of U-13C, 15N labeled peptides and proteins.

Authors:  Nathan S Astrof; Robert G Griffin
Journal:  J Magn Reson       Date:  2002 Sep-Oct       Impact factor: 2.229

6.  Resonance assignment of 13C/15N labeled solid proteins by two- and three-dimensional magic-angle-spinning NMR.

Authors:  M Hong
Journal:  J Biomol NMR       Date:  1999-09       Impact factor: 2.835

7.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

8.  Amyloid fibril formation by A beta 16-22, a seven-residue fragment of the Alzheimer's beta-amyloid peptide, and structural characterization by solid state NMR.

Authors:  J J Balbach; Y Ishii; O N Antzutkin; R D Leapman; N W Rizzo; F Dyda; J Reed; R Tycko
Journal:  Biochemistry       Date:  2000-11-14       Impact factor: 3.162

9.  A new general method for the biosynthesis of stable isotope-enriched peptides using a decahistidine-tagged ubiquitin fusion system: an application to the production of mastoparan-X uniformly enriched with 15N and 15N/13C.

Authors:  T Kohno; H Kusunoki; K Sato; K Wakamatsu
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

10.  Solid-state NMR reveals structural changes in phospholamban accompanying the functional regulation of Ca2+-ATPase.

Authors:  Eleri Hughes; David A Middleton
Journal:  J Biol Chem       Date:  2003-01-29       Impact factor: 5.157

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  12 in total

1.  Structure of the light-harvesting bacteriochlorophyll c assembly in chlorosomes from Chlorobium limicola determined by solid-state NMR.

Authors:  Ayako Egawa; Toshimichi Fujiwara; Tadashi Mizoguchi; Yoshinori Kakitani; Yasushi Koyama; Hideo Akutsu
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-10       Impact factor: 11.205

Review 2.  Solid-state 2H NMR spectroscopy of retinal proteins in aligned membranes.

Authors:  Michael F Brown; Maarten P Heyn; Constantin Job; Suhkmann Kim; Stephan Moltke; Koji Nakanishi; Alexander A Nevzorov; Andrey V Struts; Gilmar F J Salgado; Ingrid Wallat
Journal:  Biochim Biophys Acta       Date:  2007-10-23

3.  ICMRBS founder's medal 2006: biological solid-state NMR, methods and applications.

Authors:  Marc Baldus
Journal:  J Biomol NMR       Date:  2007-07-27       Impact factor: 2.835

4.  Spectral fitting for signal assignment and structural analysis of uniformly 13C-labeled solid proteins by simulated annealing based on chemical shifts and spin dynamics.

Authors:  Yoh Matsuki; Hideo Akutsu; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2007-07-06       Impact factor: 2.835

5.  Atomic structure of the bacteriochlorophyll c assembly in intact chlorosomes from Chlorobium limicola determined by solid-state NMR.

Authors:  Hideo Akutsu; Ayako Egawa; Toshimichi Fujiwara
Journal:  Photosynth Res       Date:  2010-01-09       Impact factor: 3.573

6.  Secondary structural analysis of proteins based on (13)C chemical shift assignments in unresolved solid-state NMR spectra enhanced by fragmented structure database.

Authors:  Keisuke Ikeda; Ayako Egawa; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2012-12-29       Impact factor: 2.835

7.  Structure analysis of membrane-reconstituted subunit c-ring of E. coli H+-ATP synthase by solid-state NMR.

Authors:  Yasuto Todokoro; Masatoshi Kobayashi; Takeshi Sato; Toru Kawakami; Ikuko Yumen; Saburo Aimoto; Toshimichi Fujiwara; Hideo Akutsu
Journal:  J Biomol NMR       Date:  2010-07-02       Impact factor: 2.835

8.  Active-site structure of the thermophilic Foc-subunit ring in membranes elucidated by solid-state NMR.

Authors:  Su-Jin Kang; Yasuto Todokoro; Ikuko Yumen; Bo Shen; Iku Iwasaki; Toshiharu Suzuki; Atsushi Miyagi; Masasuke Yoshida; Toshimichi Fujiwara; Hideo Akutsu
Journal:  Biophys J       Date:  2014-01-21       Impact factor: 4.033

9.  Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy.

Authors:  A J van Gammeren; F B Hulsbergen; J G Hollander; H J M de Groot
Journal:  J Biomol NMR       Date:  2005-04       Impact factor: 2.835

10.  Structure of tightly membrane-bound mastoparan-X, a G-protein-activating peptide, determined by solid-state NMR.

Authors:  Yasuto Todokoro; Ikuko Yumen; Kei Fukushima; Shin-Won Kang; Jang-Su Park; Toshiyuki Kohno; Kaori Wakamatsu; Hideo Akutsu; Toshimichi Fujiwara
Journal:  Biophys J       Date:  2006-05-19       Impact factor: 4.033

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