Literature DB >> 17215361

Structure of the light-harvesting bacteriochlorophyll c assembly in chlorosomes from Chlorobium limicola determined by solid-state NMR.

Ayako Egawa1, Toshimichi Fujiwara, Tadashi Mizoguchi, Yoshinori Kakitani, Yasushi Koyama, Hideo Akutsu.   

Abstract

We have determined the atomic structure of the bacteriochlorophyll c (BChl c) assembly in a huge light-harvesting organelle, the chlorosome of green photosynthetic bacteria, by solid-state NMR. Previous electron microscopic and spectroscopic studies indicated that chlorosomes have a cylindrical architecture with a diameter of approximately 10 nm consisting of layered BChl molecules. Assembly structures in huge noncrystalline chlorosomes have been proposed based mainly on structure-dependent chemical shifts and a few distances acquired by solid-state NMR, but those studies did not provide a definite structure. Our approach is based on (13)C dipolar spin-diffusion solid-state NMR of uniformly (13)C-labeled chlorosomes under magic-angle spinning. Approximately 90 intermolecular C C distances were obtained by simultaneous assignment of distance correlations and structure optimization preceded by polarization-transfer matrix analysis. It was determined from the approximately 90 intermolecular distances that BChl c molecules form piggyback-dimer-based parallel layers. This finding rules out the well known monomer-based structures. A molecular model of the cylinder in the chlorosome was built by using this structure. It provided insights into the mechanisms of efficient light harvesting and excitation transfer to the reaction centers. This work constitutes an important advance in the structure determination of huge intact systems that cannot be crystallized.

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Year:  2007        PMID: 17215361      PMCID: PMC1783392          DOI: 10.1073/pnas.0605911104

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  24 in total

1.  Unraveling the electronic structure of individual photosynthetic pigment-protein complexes

Authors: 
Journal:  Science       Date:  1999-07-16       Impact factor: 47.728

Review 2.  Automated analysis of NMR assignments and structures for proteins.

Authors:  H N Moseley; G T Montelione
Journal:  Curr Opin Struct Biol       Date:  1999-10       Impact factor: 6.809

3.  Exciton dynamics in the chlorosomal antennae of the green bacteria Chloroflexus aurantiacus and Chlorobium tepidum.

Authors:  V I Prokhorenko; D B Steensgaard; A R Holzwarth
Journal:  Biophys J       Date:  2000-10       Impact factor: 4.033

4.  Protein NMR structure determination with automated NOE assignment using the new software CANDID and the torsion angle dynamics algorithm DYANA.

Authors:  Torsten Herrmann; Peter Güntert; Kurt Wüthrich
Journal:  J Mol Biol       Date:  2002-05-24       Impact factor: 5.469

5.  Excitation energy transfer dynamics and excited-state structure in chlorosomes of Chlorobium phaeobacteroides.

Authors:  Jakub Psencík; Ying-Zhong Ma; Juan B Arellano; Jan Hála; Tomas Gillbro
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

6.  Exciton theory for supramolecular chlorosomal aggregates: 1. Aggregate size dependence of the linear spectra.

Authors:  V I Prokhorenko; D B Steensgaard; A R Holzwarth
Journal:  Biophys J       Date:  2003-11       Impact factor: 4.033

7.  Structural basis of light harvesting by carotenoids: peridinin-chlorophyll-protein from Amphidinium carterae.

Authors:  E Hofmann; P M Wrench; F P Sharples; R G Hiller; W Welte; K Diederichs
Journal:  Science       Date:  1996-06-21       Impact factor: 47.728

8.  Crystallography & NMR system: A new software suite for macromolecular structure determination.

Authors:  A T Brünger; P D Adams; G M Clore; W L DeLano; P Gros; R W Grosse-Kunstleve; J S Jiang; J Kuszewski; M Nilges; N S Pannu; R J Read; L M Rice; T Simonson; G L Warren
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1998-09-01

Review 9.  Chlorophyll organization in green photosynthetic bacteria.

Authors:  J M Olson
Journal:  Biochim Biophys Acta       Date:  1980-12-22

10.  CP-MAS 13C-NMR dipolar correlation spectroscopy of 13C-enriched chlorosomes and isolated bacteriochlorophyll c aggregates of Chlorobium tepidum: the self-organization of pigments is the main structural feature of chlorosomes.

Authors:  T S Balaban; A R Holzwarth; K Schaffner; G J Boender; H J de Groot
Journal:  Biochemistry       Date:  1995-11-21       Impact factor: 3.162

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  24 in total

1.  SANS investigation of the photosynthetic machinery of Chloroflexus aurantiacus.

Authors:  Kuo-Hsiang Tang; Volker S Urban; Jianzhong Wen; Yueyong Xin; Robert E Blankenship
Journal:  Biophys J       Date:  2010-10-20       Impact factor: 4.033

2.  Calculation of pigment transition energies in the FMO protein: from simplicity to complexity and back.

Authors:  Julia Adolphs; Frank Müh; Mohamed El-Amine Madjet; Thomas Renger
Journal:  Photosynth Res       Date:  2007-10-05       Impact factor: 3.573

3.  Alpha-helices direct excitation energy flow in the Fenna Matthews Olson protein.

Authors:  Frank Müh; Mohamed El-Amine Madjet; Julia Adolphs; Ayjamal Abdurahman; Björn Rabenstein; Hiroshi Ishikita; Ernst-Walter Knapp; Thomas Renger
Journal:  Proc Natl Acad Sci U S A       Date:  2007-10-11       Impact factor: 11.205

4.  Spectral fitting for signal assignment and structural analysis of uniformly 13C-labeled solid proteins by simulated annealing based on chemical shifts and spin dynamics.

Authors:  Yoh Matsuki; Hideo Akutsu; Toshimichi Fujiwara
Journal:  J Biomol NMR       Date:  2007-07-06       Impact factor: 2.835

5.  Alternating syn-anti bacteriochlorophylls form concentric helical nanotubes in chlorosomes.

Authors:  Swapna Ganapathy; Gert T Oostergetel; Piotr K Wawrzyniak; Michael Reus; Aline Gomez Maqueo Chew; Francesco Buda; Egbert J Boekema; Donald A Bryant; Alfred R Holzwarth; Huub J M de Groot
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-12       Impact factor: 11.205

Review 6.  Chlorosome antenna complexes from green photosynthetic bacteria.

Authors:  Gregory S Orf; Robert E Blankenship
Journal:  Photosynth Res       Date:  2013-06-13       Impact factor: 3.573

7.  Atomic structure of the bacteriochlorophyll c assembly in intact chlorosomes from Chlorobium limicola determined by solid-state NMR.

Authors:  Hideo Akutsu; Ayako Egawa; Toshimichi Fujiwara
Journal:  Photosynth Res       Date:  2010-01-09       Impact factor: 3.573

8.  The supramolecular organization of self-assembling chlorosomal bacteriochlorophyll c, d, or e mimics.

Authors:  Tobias Jochum; Chilla Malla Reddy; Andreas Eichhöfer; Gernot Buth; Jedrzej Szmytkowski; Heinz Kalt; David Moss; Teodor Silviu Balaban
Journal:  Proc Natl Acad Sci U S A       Date:  2008-08-28       Impact factor: 11.205

9.  Investigation on chlorosomal antenna geometries: tube, lamella and spiral-type self-aggregates.

Authors:  Juha M Linnanto; Jouko E I Korppi-Tommola
Journal:  Photosynth Res       Date:  2008-04-29       Impact factor: 3.573

10.  MAS solid state NMR of RNAs with multiple receivers.

Authors:  Christian Herbst; Kerstin Riedel; Yvonne Ihle; Jörg Leppert; Oliver Ohlenschläger; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2008-05-31       Impact factor: 2.835

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