Literature DB >> 24461014

Active-site structure of the thermophilic Foc-subunit ring in membranes elucidated by solid-state NMR.

Su-Jin Kang1, Yasuto Todokoro2, Ikuko Yumen2, Bo Shen2, Iku Iwasaki2, Toshiharu Suzuki3, Atsushi Miyagi2, Masasuke Yoshida3, Toshimichi Fujiwara2, Hideo Akutsu4.   

Abstract

FoF1-ATP synthase uses the electrochemical potential across membranes or ATP hydrolysis to rotate the Foc-subunit ring. To elucidate the underlying mechanism, we carried out a structural analysis focused on the active site of the thermophilic c-subunit (TFoc) ring in membranes with a solid-state NMR method developed for this purpose. We used stereo-array isotope labeling (SAIL) with a cell-free system to highlight the target. TFoc oligomers were purified using a virtual ring His tag. The membrane-reconstituted TFoc oligomer was confirmed to be a ring indistinguishable from that expressed in E. coli on the basis of the H(+)-translocation activity and high-speed atomic force microscopic images. For the analysis of the active site, 2D (13)C-(13)C correlation spectra of TFoc rings labeled with SAIL-Glu and -Asn were recorded. Complete signal assignment could be performed with the aid of the C(α)i+1-C(α)i correlation spectrum of specifically (13)C,(15)N-labeled TFoc rings. The C(δ) chemical shift of Glu-56, which is essential for H(+) translocation, and related crosspeaks revealed that its carboxyl group is protonated in the membrane, forming the H(+)-locked conformation with Asn-23. The chemical shift of Asp-61 C(γ) of the E. coli c ring indicated an involvement of a water molecule in the H(+) locking, in contrast to the involvement of Asn-23 in the TFoc ring, suggesting two different means of proton storage in the c rings.
Copyright © 2014 Biophysical Society. Published by Elsevier Inc. All rights reserved.

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Year:  2014        PMID: 24461014      PMCID: PMC3907233          DOI: 10.1016/j.bpj.2013.12.005

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  34 in total

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Authors:  D Stock; A G Leslie; J E Walker
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2.  Structural biology. Proton-powered turbine of a plant motor.

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Review 3.  ATP synthase--a marvellous rotary engine of the cell.

Authors:  M Yoshida; E Muneyuki; T Hisabori
Journal:  Nat Rev Mol Cell Biol       Date:  2001-09       Impact factor: 94.444

4.  A high-speed atomic force microscope for studying biological macromolecules.

Authors:  T Ando; N Kodera; E Takai; D Maruyama; K Saito; A Toda
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Journal:  J Biol Chem       Date:  2003-07-24       Impact factor: 5.157

6.  Thermophilic ATP synthase has a decamer c-ring: indication of noninteger 10:3 H+/ATP ratio and permissive elastic coupling.

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Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-09       Impact factor: 11.205

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Journal:  Proc Natl Acad Sci U S A       Date:  1990-07       Impact factor: 11.205

9.  Ionization behavior of aqueous short-chain carboxylic acids: a carbon-13 NMR study.

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10.  Signal assignments and chemical-shift structural analysis of uniformly 13C, 15N-labeled peptide, mastoparan-X, by multidimensional solid-state NMR under magic-angle spinning.

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  4 in total

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Authors:  Leonid S Brown; Vladimir Ladizhansky
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

2.  Simplifying solid-state NMR spectra for biophysical studies on membrane proteins: selective targeting of sites and interactions.

Authors:  Daniel Huster; Perunthiruthy K Madhu
Journal:  Biophys J       Date:  2014-05-20       Impact factor: 4.033

3.  Cardiolipin interaction with subunit c of ATP synthase: solid-state NMR characterization.

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Journal:  Biochim Biophys Acta       Date:  2014-08-25

4.  Direct assignment of 13C solid-state NMR signals of TFoF1 ATP synthase subunit c-ring in lipid membranes and its implication for the ring structure.

Authors:  Su-Jin Kang; Yasuto Todokoro; Suyeon Bak; Toshiharu Suzuki; Masasuke Yoshida; Toshimichi Fujiwara; Hideo Akutsu
Journal:  J Biomol NMR       Date:  2017-12-02       Impact factor: 2.835

  4 in total

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