Literature DB >> 14728274

Aligning representations of anatomy using lexical and structural methods.

Songmao Zhang1, Olivier Bodenreider.   

Abstract

OBJECTIVE: The objective of this experiment is to develop methods for aligning two representations of anatomy (the Foundational Model of Anatomy and GALEN) at the lexical and structural level.
METHODS: The alignment consists of the following four steps: 1)acquiring terms, 2) identifying anchors (i.e., shared concepts) lexically, 3) acquiring explicit and implicit semantic relations, and 4) identifying anchors structurally.
RESULTS: 2,353 anchors were identified by lexical methods, of which 91% were supported by structural evidence. No evidence was found for 7.5%of the anchors and 1.5% received negative evidence. DISCUSSION: The importance of taking advantage of implicit domain knowledge acquired through complementation,augmentation, and inference is discussed.

Mesh:

Year:  2003        PMID: 14728274      PMCID: PMC1480279     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  5 in total

1.  GALEN's model of parts and wholes: experience and comparisons.

Authors:  J Rogers; A Rector
Journal:  Proc AMIA Symp       Date:  2000

2.  Bidirectional mereological reasoning in anatomical knowledge bases.

Authors:  S Schulz
Journal:  Proc AMIA Symp       Date:  2001

3.  Challenges in precisely aligning models of human anatomy using generic schema matching.

Authors:  Peter Mork; Rachel Pottinger; Philip A Bernstein
Journal:  Stud Health Technol Inform       Date:  2004

4.  Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.

Authors:  C Rosse; J L Mejino; B R Modayur; R Jakobovits; K P Hinshaw; J F Brinkley
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

5.  The GRAIL concept modelling language for medical terminology.

Authors:  A L Rector; S Bechhofer; C A Goble; I Horrocks; W A Nowlan; W D Solomon
Journal:  Artif Intell Med       Date:  1997-02       Impact factor: 5.326

  5 in total
  16 in total

1.  Comparing associative relationships among equivalent concepts across ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2004

2.  Investigating implicit knowledge in ontologies with application to the anatomical domain.

Authors:  S Zhang; O Bodenreider
Journal:  Pac Symp Biocomput       Date:  2004

3.  Law and order: assessing and enforcing compliance with ontological modeling principles in the Foundational Model of Anatomy.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Comput Biol Med       Date:  2005-09-06       Impact factor: 4.589

4.  Alignment of multiple ontologies of anatomy: deriving indirect mappings from direct mappings to a reference.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2005

5.  Comparing two approaches for aligning representations of anatomy.

Authors:  Songmao Zhang; Peter Mork; Olivier Bodenreider; Philip A Bernstein
Journal:  Artif Intell Med       Date:  2007-01-23       Impact factor: 5.326

6.  Comparing the representation of anatomy in the FMA and SNOMED CT.

Authors:  Olivier Bodenreider; Songmao Zhang
Journal:  AMIA Annu Symp Proc       Date:  2006

7.  Differences among cell-structure ontologies: FMA, GO, & CCO.

Authors:  Alan P Au; Xiang Li; John H Gennari
Journal:  AMIA Annu Symp Proc       Date:  2006

8.  A fault model for ontology mapping, alignment, and linking systems.

Authors:  Helen L Johnson; K Bretonnel Cohen; Lawrence Hunter
Journal:  Pac Symp Biocomput       Date:  2007

9.  Auditing the semantic completeness of SNOMED CT using formal concept analysis.

Authors:  Guoqian Jiang; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2008-10-24       Impact factor: 4.497

10.  Experience in Aligning Anatomical Ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Int J Semant Web Inf Syst       Date:  2007       Impact factor: 0.843

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