Literature DB >> 11825258

Bidirectional mereological reasoning in anatomical knowledge bases.

S Schulz1.   

Abstract

Mereological relationships--relationships between parts and wholes--are essential for ontological engineering in the anatomical domain. We propose a knowledge engineering approach that emulates mereological reasoning by taxonomic reasoning based on SEP triplets, a special data structure for the encoding of part-whole relations, which is fully embedded in the formal framework of standard description logics. We extend the SEP formalism in order to account not only for the part-of but also for the has-part relation, both being considered transitive in our domain. Furthermore we analyze the distinction between the ontological primitives singletons, collections and mass concepts in the anatomy domain and sketch how reasoning about these kinds of concepts can be accounted for in a knowledge representation language, using the extended SEP formalism.

Mesh:

Year:  2001        PMID: 11825258      PMCID: PMC2243646     

Source DB:  PubMed          Journal:  Proc AMIA Symp        ISSN: 1531-605X


  7 in total

1.  GALEN's model of parts and wholes: experience and comparisons.

Authors:  J Rogers; A Rector
Journal:  Proc AMIA Symp       Date:  2000

2.  MedSynDiKATe--design considerations for an ontology-based medical text understanding system.

Authors:  U Hahn; M Romacker; S Schulz
Journal:  Proc AMIA Symp       Date:  2000

3.  Part-whole reasoning in medical ontologies revisited--introducing SEP triplets into classification-based description logics.

Authors:  S Schulz; M Romacker; U Hahn
Journal:  Proc AMIA Symp       Date:  1998

4.  Motivation and organizational principles for anatomical knowledge representation: the digital anatomist symbolic knowledge base.

Authors:  C Rosse; J L Mejino; B R Modayur; R Jakobovits; K P Hinshaw; J F Brinkley
Journal:  J Am Med Inform Assoc       Date:  1998 Jan-Feb       Impact factor: 4.497

5.  The GRAIL concept modelling language for medical terminology.

Authors:  A L Rector; S Bechhofer; C A Goble; I Horrocks; W A Nowlan; W D Solomon
Journal:  Artif Intell Med       Date:  1997-02       Impact factor: 5.326

6.  The representation of meaning in the UMLS.

Authors:  A T McCray; S J Nelson
Journal:  Methods Inf Med       Date:  1995-03       Impact factor: 2.176

7.  A logical foundation for representation of clinical data.

Authors:  K E Campbell; A K Das; M A Musen
Journal:  J Am Med Inform Assoc       Date:  1994 May-Jun       Impact factor: 4.497

  7 in total
  8 in total

1.  A knowledge representation view on biomedical structure and function.

Authors:  Stefan Schulz; Udo Hahn
Journal:  Proc AMIA Symp       Date:  2002

2.  Aligning representations of anatomy using lexical and structural methods.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  AMIA Annu Symp Proc       Date:  2003

3.  Logic-based remodeling of the Digital Anatomist Foundational Model.

Authors:  Rainer Beck; Stefan Schulz
Journal:  AMIA Annu Symp Proc       Date:  2003

4.  Comparing associative relationships among equivalent concepts across ontologies.

Authors:  Songmao Zhang; Olivier Bodenreider
Journal:  Stud Health Technol Inform       Date:  2004

5.  Investigating implicit knowledge in ontologies with application to the anatomical domain.

Authors:  S Zhang; O Bodenreider
Journal:  Pac Symp Biocomput       Date:  2004

6.  Development and evaluation of methods for structured recording of heart murmur findings using SNOMED-CT post-coordination.

Authors:  Julie M Green; Jeffrey R Wilcke; Jonathon Abbott; Loren P Rees
Journal:  J Am Med Inform Assoc       Date:  2006-02-24       Impact factor: 4.497

7.  How to distinguish parthood from location in bioontologies.

Authors:  Stefan Schulz; Philipp Daumke; Barry Smith; Udo Hahn
Journal:  AMIA Annu Symp Proc       Date:  2005

8.  The Pitfalls of Thesaurus Ontologization - the Case of the NCI Thesaurus.

Authors:  Stefan Schulz; Daniel Schober; Ilinca Tudose; Holger Stenzhorn
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13
  8 in total

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